Open khoffschlag opened 1 year ago
To implement all there, many designs are possible but a possible design could be that we have two small pumi moduels ( with @GroupPipeline decorator)
fetch_atlas -> extract_timeseries
fetch_atlas \
modularize_atlas -> extract_timeseries
fetch_atlas /
Now we use the pick_atlas pipeline. This will be substituted by the new functions., but it can be used as an example.
PUMI/pipelines/multimodel/atlas.py
and an example scipt (in the folder 'examples'), with wich all nilearn atlases can be tested
This could be done via nilearn (https://nilearn.github.io/stable/modules/datasets.html?highlight=datasets#module-nilearn.datasets).