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pni-lab / PUMI

PUMI: neuroimaging Pipelines Using Modular workflow Integration
https://pumi.readthedocs.io/en/latest/
GNU General Public License v3.0
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check if the output_dir and working_dir parameters are tackled well in the new BidsApp implementaqtion #145

Closed spisakt closed 1 year ago

spisakt commented 1 year ago

looks like there is no effect when changing these parameters.

Looks like

self.pipeline(self.name, bids_dir=self.bids_dir, output_dir=self.output_dir, working_dir=self.working_dir,
                          subjects=self.participant_label, **pipeline_specific_arguments, **self.kwargs)

should rather set base_dir and sink_dir?

it looks like the decorated pipeline function (expected by BidsApp) calls to the wrapper funcftion of decorator, which expects this? Correct?