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pni-libraries / libpninexus

IO library
GNU General Public License v2.0
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cannot install it on Debian8 #34

Closed Tingfe closed 7 years ago

Tingfe commented 8 years ago

I tried to install the libpniio in my Debian8, but it always failed. please see the process below:

tonny@debian:~/libpniio-1.0.0$ mkdir build tonny@debian:~/libpniio-1.0.0$ cd build/ tonny@debian:~/libpniio-1.0.0/build$ cmake ../ -- The C compiler identification is GNU 4.9.2 -- The CXX compiler identification is GNU 4.9.2 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done No build type specified - default is RELEASE -- Boost version: 1.60.0 -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- Found HDF5: /usr/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so
found GNU compiler ... setup for release build ... 3.0.2 -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int8_t -- Check size of int8_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of int16_t -- Check size of int16_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of long double -- Check size of long double - done -- checking for one of the modules 'pnicore' -- Boost version: 1.60.0 -- Found the following Boost libraries: -- program_options -- system -- regex -- checking for one of the modules 'cppunit' /usr/local/hdf5/include -- Found Doxygen: /usr/bin/doxygen (found version "1.8.8") multidim_attribute_test_bool_t.cpp;multidim_attribute_bool_t.xml;multidim_attribute_test_complex128.cpp;multidim_attribute_complex128.xml;multidim_attribute_test_complex64.cpp;multidim_attribute_complex64.xml;multidim_attribute_test_complex32.cpp;multidim_attribute_complex32.xml;multidim_attribute_test_float128.cpp;multidim_attribute_float128.xml;multidim_attribute_test_float64.cpp;multidim_attribute_float64.xml;multidim_attribute_test_float32.cpp;multidim_attribute_float32.xml;multidim_attribute_test_int64.cpp;multidim_attribute_int64.xml;multidim_attribute_test_uint64.cpp;multidim_attribute_uint64.xml;multidim_attribute_test_int32.cpp;multidim_attribute_int32.xml;multidim_attribute_test_uint32.cpp;multidim_attribute_uint32.xml;multidim_attribute_test_int16.cpp;multidim_attribute_int16.xml;multidim_attribute_test_uint16.cpp;multidim_attribute_uint16.xml;multidim_attribute_test_int8.cpp;multidim_attribute_int8.xml;multidim_attribute_test_uint8.cpp;multidim_attribute_uint8.xml multidim_field_test_bool_t.cpp;multidim_field_bool_t.xml;multidim_field_test_complex128.cpp;multidim_field_complex128.xml;multidim_field_test_complex64.cpp;multidim_field_complex64.xml;multidim_field_test_complex32.cpp;multidim_field_complex32.xml;multidim_field_test_float128.cpp;multidim_field_float128.xml;multidim_field_test_float64.cpp;multidim_field_float64.xml;multidim_field_test_float32.cpp;multidim_field_float32.xml;multidim_field_test_int64.cpp;multidim_field_int64.xml;multidim_field_test_uint64.cpp;multidim_field_uint64.xml;multidim_field_test_int32.cpp;multidim_field_int32.xml;multidim_field_test_uint32.cpp;multidim_field_uint32.xml;multidim_field_test_int16.cpp;multidim_field_int16.xml;multidim_field_test_uint16.cpp;multidim_field_uint16.xml;multidim_field_test_int8.cpp;multidim_field_int8.xml;multidim_field_test_uint8.cpp;multidim_field_uint8.xml -- Configuring done CMake Warning (dev) at src/CMakeLists.txt:35 (add_dependencies): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning.

The dependency target "config.hpp" of target "pniio" does not exist. This warning is for project developers. Use -Wno-dev to suppress it.

-- Generating done -- Build files have been written to: /home/tonny/libpniio-1.0.0/build tonny@debian:~/libpniio-1.0.0/build$ make Scanning dependencies of target formatter_objects [ 5%] Building CXX object src/formatters/CMakeFiles/formatter_objects.dir/scalar_format.cpp.o In file included from /usr/local/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/local/include/boost/iostreams/detail/resolve.hpp:26, from /usr/local/include/boost/iostreams/detail/push.hpp:24, from /usr/local/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/local/include/boost/iostreams/stream_buffer.hpp:22, from /usr/local/include/boost/iostreams/stream.hpp:21, from /usr/local/include/boost/spirit/home/karma/stream/detail/iterator_sink.hpp:13, from /usr/local/include/boost/spirit/home/karma/stream/stream.hpp:24, from /usr/local/include/boost/spirit/home/karma/stream.hpp:14, from /usr/local/include/boost/spirit/home/karma.hpp:27, from /usr/local/include/boost/spirit/include/karma.hpp:16, from /home/tonny/libpniio-1.0.0/./include/pni/io/formatters/formatter.hpp:30, from /home/tonny/libpniio-1.0.0/src/formatters/scalar_format.cpp:26: /usr/local/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated

pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")

                                                                           ^

In file included from /usr/local/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/local/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/local/include/boost/iostreams/detail/resolve.hpp:26, from /usr/local/include/boost/iostreams/detail/push.hpp:24, from /usr/local/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/local/include/boost/iostreams/stream_buffer.hpp:22, from /usr/local/include/boost/iostreams/stream.hpp:21, from /usr/local/include/boost/spirit/home/karma/stream/detail/iterator_sink.hpp:13, from /usr/local/include/boost/spirit/home/karma/stream/stream.hpp:24, from /usr/local/include/boost/spirit/home/karma/stream.hpp:14, from /usr/local/include/boost/spirit/home/karma.hpp:27, from /usr/local/include/boost/spirit/include/karma.hpp:16, from /home/tonny/libpniio-1.0.0/./include/pni/io/formatters/formatter.hpp:30, from /home/tonny/libpniio-1.0.0/src/formatters/scalar_format.cpp:26: /usr/local/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated

pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")

                                                                                ^

In file included from /usr/local/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/local/include/boost/iostreams/detail/resolve.hpp:26, from /usr/local/include/boost/iostreams/detail/push.hpp:24, from /usr/local/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/local/include/boost/iostreams/stream_buffer.hpp:22, from /usr/local/include/boost/iostreams/stream.hpp:21, from /usr/local/include/boost/spirit/home/karma/stream/detail/iterator_sink.hpp:13, from /usr/local/include/boost/spirit/home/karma/stream/stream.hpp:24, from /usr/local/include/boost/spirit/home/karma/stream.hpp:14, from /usr/local/include/boost/spirit/home/karma.hpp:27, from /usr/local/include/boost/spirit/include/karma.hpp:16, from /home/tonny/libpniio-1.0.0/./include/pni/io/formatters/formatter.hpp:30, from /home/tonny/libpniio-1.0.0/src/formatters/scalar_format.cpp:26: /usr/local/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated

pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")

                                                                                ^

[ 5%] Building CXX object src/formatters/CMakeFiles/formatter_objects.dir/vector_format.cpp.o In file included from /usr/local/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/local/include/boost/iostreams/detail/resolve.hpp:26, from /usr/local/include/boost/iostreams/detail/push.hpp:24, from /usr/local/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/local/include/boost/iostreams/stream_buffer.hpp:22, from /usr/local/include/boost/iostreams/stream.hpp:21, from /usr/local/include/boost/spirit/home/karma/stream/detail/iterator_sink.hpp:13, from /usr/local/include/boost/spirit/home/karma/stream/stream.hpp:24, from /usr/local/include/boost/spirit/home/karma/stream.hpp:14, from /usr/local/include/boost/spirit/home/karma.hpp:27, from /usr/local/include/boost/spirit/include/karma.hpp:16, from /home/tonny/libpniio-1.0.0/./include/pni/io/formatters/formatter.hpp:30, from /home/tonny/libpniio-1.0.0/src/formatters/vector_format.cpp:26: /usr/local/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated

pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")

                                                                           ^

In file included from /usr/local/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/local/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/local/include/boost/iostreams/detail/resolve.hpp:26, from /usr/local/include/boost/iostreams/detail/push.hpp:24, from /usr/local/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/local/include/boost/iostreams/stream_buffer.hpp:22, from /usr/local/include/boost/iostreams/stream.hpp:21, from /usr/local/include/boost/spirit/home/karma/stream/detail/iterator_sink.hpp:13, from /usr/local/include/boost/spirit/home/karma/stream/stream.hpp:24, from /usr/local/include/boost/spirit/home/karma/stream.hpp:14, from /usr/local/include/boost/spirit/home/karma.hpp:27, from /usr/local/include/boost/spirit/include/karma.hpp:16, from /home/tonny/libpniio-1.0.0/./include/pni/io/formatters/formatter.hpp:30, from /home/tonny/libpniio-1.0.0/src/formatters/vector_format.cpp:26: /usr/local/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated

pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")

                                                                                ^

In file included from /usr/local/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/local/include/boost/iostreams/detail/resolve.hpp:26, from /usr/local/include/boost/iostreams/detail/push.hpp:24, from /usr/local/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/local/include/boost/iostreams/stream_buffer.hpp:22, from /usr/local/include/boost/iostreams/stream.hpp:21, from /usr/local/include/boost/spirit/home/karma/stream/detail/iterator_sink.hpp:13, from /usr/local/include/boost/spirit/home/karma/stream/stream.hpp:24, from /usr/local/include/boost/spirit/home/karma/stream.hpp:14, from /usr/local/include/boost/spirit/home/karma.hpp:27, from /usr/local/include/boost/spirit/include/karma.hpp:16, from /home/tonny/libpniio-1.0.0/./include/pni/io/formatters/formatter.hpp:30, from /home/tonny/libpniio-1.0.0/src/formatters/vector_format.cpp:26: /usr/local/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated

pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")

                                                                                ^

[ 5%] Built target formatter_objects Scanning dependencies of target cbf_objects [ 10%] Building CXX object src/cbf/CMakeFiles/cbf_objects.dir/cbf_reader.cpp.o [ 10%] Building CXX object src/cbf/CMakeFiles/cbf_objects.dir/dectris_reader.cpp.o [ 10%] Built target cbf_objects Scanning dependencies of target fio_objects [ 10%] Building CXX object src/fio/CMakeFiles/fio_objects.dir/fio_reader.cpp.o [ 10%] Built target fio_objects Scanning dependencies of target h5_objects [ 10%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/attribute_imp.cpp.o [ 10%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/attribute_utils.cpp.o [ 15%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/field_factory.cpp.o [ 15%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/field_imp.cpp.o [ 15%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/file_imp.cpp.o [ 15%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/group_imp.cpp.o [ 21%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5dataspace.cpp.o [ 21%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5datatype.cpp.o [ 21%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5deflate_filter.cpp.o [ 26%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5_error.cpp.o [ 26%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5_error_stack.cpp.o [ 26%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5filter.cpp.o [ 31%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5link.cpp.o [ 31%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/h5object_types.cpp.o [ 31%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/hdf5_utilities.cpp.o [ 36%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/object_imp.cpp.o [ 36%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/string_utils.cpp.o [ 36%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/selection.cpp.o [ 42%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/nullterm_formatter.cpp.o [ 42%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/charpad_formatter.cpp.o [ 42%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/string_formatter.cpp.o [ 47%] Building CXX object src/nx/h5/CMakeFiles/h5_objects.dir/string_formatter_factory.cpp.o [ 47%] Built target h5_objects Scanning dependencies of target xml_objects [ 47%] Building CXX object src/nx/xml/CMakeFiles/xml_objects.dir/data_node.cpp.o [ 47%] Building CXX object src/nx/xml/CMakeFiles/xml_objects.dir/node.cpp.o /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp: In function ‘bool pni::io::nx::xml::has_attribute(const node&, const string&)’: /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:124:16: error: cannot convert ‘boost::optional<const boost::property_tree::basic_ptree<std::basic_string, std::basic_string >&>’ to ‘bool’ in return return attr; ^ In file included from /usr/local/include/boost/property_tree/detail/xml_parser_utils.hpp:15:0, from /usr/local/include/boost/property_tree/detail/xml_parser_write.hpp:15, from /usr/local/include/boost/property_tree/xml_parser.hpp:15, from /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:26: /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp: In instantiation of ‘class boost::property_tree::xml_parser::xml_writer_settings’: /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:130:65: required from here /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:38:35: error: ‘char’ is not a class, struct, or union type typedef typename Str::value_type Ch; ^ /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:40:9: error: ‘char’ is not a class, struct, or union type xml_writer_settings(Ch inchar = Ch(' '), ^ /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:50:33: error: ‘char’ is not a class, struct, or union type typename Str::size_type indent_count; ^ /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp: In function ‘std::ostream& pni::io::nx::xml::operator<<(std::ostream&, const node&)’: /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:130:72: error: no matching function for call to ‘boost::property_tree::xml_parser::xml_writer_settings::xml_writer_settings(char, int)’ boost::property_tree::xml_writer_settings settings('\t',1); ^ /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:130:72: note: candidates are: In file included from /usr/local/include/boost/property_tree/detail/xml_parser_utils.hpp:15:0, from /usr/local/include/boost/property_tree/detail/xml_parser_write.hpp:15, from /usr/local/include/boost/property_tree/xml_parser.hpp:15, from /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:26: /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:36:11: note: boost::property_tree::xml_parser::xml_writer_settings::xml_writer_settings() class xml_writer_settings ^ /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:36:11: note: candidate expects 0 arguments, 2 provided /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:36:11: note: constexpr boost::property_tree::xml_parser::xml_writer_settings::xml_writer_settings(const boost::property_tree::xml_parser::xml_writer_settings&) /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:36:11: note: candidate expects 1 argument, 2 provided /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:36:11: note: constexpr boost::property_tree::xml_parser::xml_writer_settings::xml_writer_settings(boost::property_tree::xml_parser::xml_writer_settings&&) /usr/local/include/boost/property_tree/detail/xml_parser_writer_settings.hpp:36:11: note: candidate expects 1 argument, 2 provided /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:132:53: error: no matching function for call to ‘write_xml(std::ostream&, const node&, boost::property_tree::xml_parser::xml_writer_settings&)’ boost::property_tree::write_xml(o,n,settings); ^ /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:132:53: note: candidates are: In file included from /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:26:0: /usr/local/include/boost/property_tree/xml_parser.hpp:124:10: note: template void boost::property_tree::xml_parser::write_xml(const string&, const Ptree&, const std::locale&, const boost::property_tree::xml_parser::xml_writer_settings&) void write_xml(const std::string &filename, ^ /usr/local/include/boost/property_tree/xml_parser.hpp:124:10: note: template argument deduction/substitution failed: /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:132:53: note: cannot convert ‘o’ (type ‘std::ostream {aka std::basic_ostream}’) to type ‘const string& {aka const std::basic_string&}’ boost::property_tree::write_xml(o,n,settings); ^ In file included from /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:26:0: /usr/local/include/boost/property_tree/xml_parser.hpp:100:10: note: void boost::property_tree::xml_parser::write_xml(std::basic_ostream&, const Ptree&, const boost::property_tree::xml_parser::xml_writer_settings&) [with Ptree = boost::property_tree::basic_ptreestd::basic_string<char, std::basic_string >; typename Ptree::key_type::value_type = char; typename Ptree::key_type = std::basic_string] void write_xml(std::basic_ostream< ^ /usr/local/include/boost/property_tree/xml_parser.hpp:100:10: note: no known conversion for argument 3 from ‘boost::property_tree::xml_parser::xml_writer_settings’ to ‘const boost::property_tree::xml_parser::xml_writer_settingsstd::basic_string&’ /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp: In function ‘bool pni::io::nx::xml::has_attribute(const node&, const string&)’: /home/tonny/libpniio-1.0.0/src/nx/xml/node.cpp:125:5: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/nx/xml/CMakeFiles/xml_objects.dir/build.make:77: recipe for target 'src/nx/xml/CMakeFiles/xml_objects.dir/node.cpp.o' failed make[2]: * [src/nx/xml/CMakeFiles/xml_objects.dir/node.cpp.o] Error 1 CMakeFiles/Makefile2:1445: recipe for target 'src/nx/xml/CMakeFiles/xml_objects.dir/all' failed make[1]: * [src/nx/xml/CMakeFiles/xml_objects.dir/all] Error 2 Makefile:127: recipe for target 'all' failed make: *\ [all] Error 2

Tingfe commented 8 years ago

Debian7 is more suitable for this program. But we can use Debian7's source to solve this problem. and follow this guide https://github.com/pni-libraries/libpnicore/wiki/Installation

eugenwintersberger commented 7 years ago

Why didn'nt you use the debian packages for Debian 8?