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pnlbwh / CNN-Diffusion-MRIBrain-Segmentation

CNN based brain masking
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What view mask is generated by default? #12

Closed tashrifbillah closed 4 years ago

tashrifbillah commented 4 years ago

The program runs without having to provide -a, -c, or -s. So what view mask is generated by default?

python pipeline/dwi_masking.py -h

Using TensorFlow backend.
usage: dwi_masking.py [-h] [-i DWI] [-ref REF] [-f MODEL_FOLDER] [-a [AXIAL]]
                      [-c [CORONAL]] [-s [SAGITTAL]] [-nproc CR]

optional arguments:
  -h, --help       show this help message and exit
  -i DWI           input caselist file in txt format
  -ref REF         reference b0 file for registration
  -f MODEL_FOLDER  folder which contain the trained model
  -a [AXIAL]       generate axial Mask (yes/true/y/1)
  -c [CORONAL]     generate coronal Mask (yes/true/y/1)
  -s [SAGITTAL]    generate sagittal Mask (yes/true/y/1)
  -nproc CR        number of processes to use
senthilcaesar commented 4 years ago

By default multi view mask is generated

tashrifbillah commented 4 years ago

Help message clarified by https://github.com/pnlbwh/CNN-Diffusion-MRIBrain-Segmentation/commit/58ea0ecf5e5b896d0af1b026db01c8aaadd5b66c