pnlbwh / dMRIharmonization

Multi-site dMRI harmonization
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force removes the reference diffusion measures #16

Closed tashrifbillah closed 5 years ago

tashrifbillah commented 5 years ago

Add a note in README.md

https://github.com/pnlbwh/dMRIharmonization/blob/spm-bspline/lib/harmonization.py#L268

The above checking is there to let a user harmonize data multiple times without having to remove previous results manually.

Make a note about --force in general.

tashrifbillah commented 5 years ago

If all cases are copied to one directory and dti directory is same for all cases, the above happens.

Ideally, each case should have its own folder, the problem won't happen.

tashrifbillah commented 5 years ago

When you want to --debug under the above condition, reference diffusion measures are no longer there and so --debug fails.

tashrifbillah commented 5 years ago

Prompt the user to have separate directories for each case or NOT use --debug.