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pnlbwh / dMRIharmonization

Multi-site dMRI harmonization
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Skipping unring step #74

Closed josephmje closed 3 years ago

josephmje commented 3 years ago

Hi all,

I noticed that the pipeline performs Gibbs unringing. If this step is already part of a pre-processing workflow, should it be skipped when running harmonization?

Thank you!

suheyla2 commented 3 years ago

Hi,

Are you using the --resample flag in the harmonization? Gibbs unringing is only applied with --resample.

Best, Suheyla

From: Michael Joseph @.> Sent: Wednesday, March 10, 2021 12:47 PM To: pnlbwh/dMRIharmonization @.> Cc: Subscribed @.***> Subject: [pnlbwh/dMRIharmonization] Skipping unring step (#74)

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Hi all,

I noticed that the pipeline performs Gibbs unringing. If this step is already part of a pre-processing workflow, should it be skipped when running harmonization?

Thank you!

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josephmje commented 3 years ago

Thank you @suheyla2! I didn't realize that unringing only runs when the flag is used.