I downloaded this pipeline and I have an issue when I run the pipeline.test.
I am going to use this pipeline in the high-performance computing, M3 of Monash University, which might be related to this issue. I set up the software and its path as the followings.
And the output is the file I attached.
The problem is segmentation fault in line 270 of antsMultivariateTemplateConstruction2_fixed_random_seed.sh, but I couldn't find the solution to this problem. This may be a very basic problem, but I would appreciate any help you can give me.
issue.txt
I downloaded this pipeline and I have an issue when I run the pipeline.test. I am going to use this pipeline in the high-performance computing, M3 of Monash University, which might be related to this issue. I set up the software and its path as the followings.
source am35_scratch/yoshitos/miniconda/bin/activate conda activate MyPythonEnv conda activate harmonization export PATH=$PATH:/home/yoshitos/unring/fsl export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/matlab/r2017a/runtime/glnxa64:/usr/local/matlab/r2017a/sys/os/glnxa64:/usr/local/matlab/r2017a/extern/bin/glnxa64:/usr/local/matlab/r2017a/sys/opengl/lib/glnxa64:/usr/local/matlab/r2017a/bin/glnxa64 FSLDIR=/usr/local/fsl/5.0.11/fsl export FSLOUTPUTTYPE=NIFTI_GZ export ANTSPATH=/home/yoshitos/am35_scratch/yoshitos/miniconda/conda/envs/harmonization/bin
And the output is the file I attached. The problem is segmentation fault in line 270 of antsMultivariateTemplateConstruction2_fixed_random_seed.sh, but I couldn't find the solution to this problem. This may be a very basic problem, but I would appreciate any help you can give me. issue.txt