pnlbwh luigi-pnlpipe issues

pnlbwh / luigi-pnlpipe

NIFTI pipeline glued together using Luigi

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Basic packages for running pnlNipype, luigi-pnlpipe, etc.

#71 tashrifbillah opened 1 day ago
8
index.txt instructions

#70 RyanZurrin opened 1 month ago
2
SynB0 pipeline tutorial documentation

#69 RyanZurrin opened 2 months ago
0
Document running instructions for WMA

#68 tashrifbillah opened 11 months ago
1
Add wma800 to Luigi pipeline

#67 tashrifbillah closed 10 months ago
1
Add synb0

#66 tashrifbillah closed 10 months ago
1
Adding synb0 to eddy runner script

#65 RyanZurrin closed 1 year ago
0
Use id instead of i

#64 nickckim closed 1 year ago
2
Use ses-* instead of ses-1

#63 nickckim closed 1 year ago
0
Use ses-* instead of ses-1

#62 nickckim closed 1 year ago
0
Use ses-* instead of ses-1

#61 nickckim closed 1 year ago
0
Corrected path to raw data

#60 nickckim closed 1 year ago
0
Update caselist logic to be consistent with other scripts

#59 nickckim closed 1 year ago
0
Include caselist in run_gpu_mask.lsf script for consistency

#58 tashrifbillah closed 1 year ago
1
Some more configs

#57 tashrifbillah closed 1 year ago
0
Some more example scripts and struct_pipe bug fix

#56 tashrifbillah closed 1 year ago
0
Add hdbet

#55 tashrifbillah closed 1 year ago
1
Replace MABS with HD-BET

#54 tashrifbillah opened 2 years ago
1
Convenient HCP pipe mask name does not streamline with fs2dwi

#53 tashrifbillah opened 2 years ago
0
Generate relative HCP pipe output softlinks

#52 tashrifbillah opened 2 years ago
0
Hookup hcppipe

#51 tashrifbillah closed 2 years ago
0
Omit mask_qc parts from documentation

#50 tashrifbillah opened 3 years ago
0
Working combination of Luigi+sqlalchemy

#49 tashrifbillah opened 3 years ago
0
Combine BetMask and CNNMask

#48 tashrifbillah opened 3 years ago
1
How to run HCP pipeline

#47 tashrifbillah closed 3 years ago
6
Intoduce FslOutDir param

#46 tashrifbillah closed 3 years ago
0
Put Luigi server under some authentication

#45 tashrifbillah closed 3 years ago
1
[Diff only] [Closing soon] Changes necessary to omit mask_qc entirely

#44 tashrifbillah closed 3 years ago
1
mask_qc param, topup_eddy output, documentation

#43 tashrifbillah closed 3 years ago
0
Remove mask polling mechanism

#42 tashrifbillah closed 3 years ago
3
Obtain number of dirs from file, not from name string

#41 tashrifbillah closed 3 years ago
2
Add history visualization URLs to README

#40 tashrifbillah closed 3 years ago
4
Luigi server for running jobs inside containers

#39 tashrifbillah closed 3 years ago
1
StrcutMask error - output is generated in rawdata dir (not derivatives dir)

#38 mdibiase1 closed 3 years ago
1
`*mask_qc=True` feature occupies resources idly creating backlog of jobs

#37 tashrifbillah closed 3 years ago
4
docs: update the example structures to have session sub-directory

#36 kcho opened 3 years ago
3
[BUG] Omit the CWD assumption

#35 tashrifbillah closed 3 years ago
1
Add output dir for FslEddy

#34 tashrifbillah closed 3 years ago
1
Add container links and tests to README

#33 tashrifbillah closed 3 years ago
1
download IITmean_b0_256.nii.gz for tests

#32 tashrifbillah closed 3 years ago
0
Branch handling, report export

#31 tashrifbillah closed 3 years ago
2
WMA atlas download instruction

#30 tashrifbillah closed 3 years ago
2
Remove docs/flowchart*png

#29 tashrifbillah closed 3 years ago
1
Delete docs/flowchart*png

#28 tashrifbillah closed 3 years ago
1
tests/ needs a README.md

#27 tashrifbillah closed 3 years ago
1
Log hashes of software used in each task

#26 tashrifbillah closed 3 years ago
1
hcp<--provenance<--azure

#25 tashrifbillah closed 3 years ago
1
Tracts reproducibility issue

#24 tashrifbillah closed 3 years ago
0
Ask to clone pnlNipype alongside

#23 tashrifbillah closed 3 years ago
1
Test infrastructure

#22 tashrifbillah closed 3 years ago
0