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pnlbwh
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luigi-pnlpipe
NIFTI pipeline glued together using Luigi
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Basic packages for running pnlNipype, luigi-pnlpipe, etc.
#71
tashrifbillah
opened
1 day ago
8
index.txt instructions
#70
RyanZurrin
opened
1 month ago
2
SynB0 pipeline tutorial documentation
#69
RyanZurrin
opened
2 months ago
0
Document running instructions for WMA
#68
tashrifbillah
opened
11 months ago
1
Add wma800 to Luigi pipeline
#67
tashrifbillah
closed
10 months ago
1
Add synb0
#66
tashrifbillah
closed
10 months ago
1
Adding synb0 to eddy runner script
#65
RyanZurrin
closed
1 year ago
0
Use id instead of i
#64
nickckim
closed
1 year ago
2
Use ses-* instead of ses-1
#63
nickckim
closed
1 year ago
0
Use ses-* instead of ses-1
#62
nickckim
closed
1 year ago
0
Use ses-* instead of ses-1
#61
nickckim
closed
1 year ago
0
Corrected path to raw data
#60
nickckim
closed
1 year ago
0
Update caselist logic to be consistent with other scripts
#59
nickckim
closed
1 year ago
0
Include caselist in run_gpu_mask.lsf script for consistency
#58
tashrifbillah
closed
1 year ago
1
Some more configs
#57
tashrifbillah
closed
1 year ago
0
Some more example scripts and struct_pipe bug fix
#56
tashrifbillah
closed
1 year ago
0
Add hdbet
#55
tashrifbillah
closed
1 year ago
1
Replace MABS with HD-BET
#54
tashrifbillah
opened
2 years ago
1
Convenient HCP pipe mask name does not streamline with fs2dwi
#53
tashrifbillah
opened
2 years ago
0
Generate relative HCP pipe output softlinks
#52
tashrifbillah
opened
2 years ago
0
Hookup hcppipe
#51
tashrifbillah
closed
2 years ago
0
Omit mask_qc parts from documentation
#50
tashrifbillah
opened
3 years ago
0
Working combination of Luigi+sqlalchemy
#49
tashrifbillah
opened
3 years ago
0
Combine BetMask and CNNMask
#48
tashrifbillah
opened
3 years ago
1
How to run HCP pipeline
#47
tashrifbillah
closed
3 years ago
6
Intoduce FslOutDir param
#46
tashrifbillah
closed
3 years ago
0
Put Luigi server under some authentication
#45
tashrifbillah
closed
3 years ago
1
[Diff only] [Closing soon] Changes necessary to omit mask_qc entirely
#44
tashrifbillah
closed
3 years ago
1
mask_qc param, topup_eddy output, documentation
#43
tashrifbillah
closed
3 years ago
0
Remove mask polling mechanism
#42
tashrifbillah
closed
3 years ago
3
Obtain number of dirs from file, not from name string
#41
tashrifbillah
closed
3 years ago
2
Add history visualization URLs to README
#40
tashrifbillah
closed
3 years ago
4
Luigi server for running jobs inside containers
#39
tashrifbillah
closed
3 years ago
1
StrcutMask error - output is generated in rawdata dir (not derivatives dir)
#38
mdibiase1
closed
3 years ago
1
`*mask_qc=True` feature occupies resources idly creating backlog of jobs
#37
tashrifbillah
closed
3 years ago
4
docs: update the example structures to have session sub-directory
#36
kcho
opened
3 years ago
3
[BUG] Omit the CWD assumption
#35
tashrifbillah
closed
3 years ago
1
Add output dir for FslEddy
#34
tashrifbillah
closed
3 years ago
1
Add container links and tests to README
#33
tashrifbillah
closed
3 years ago
1
download IITmean_b0_256.nii.gz for tests
#32
tashrifbillah
closed
3 years ago
0
Branch handling, report export
#31
tashrifbillah
closed
3 years ago
2
WMA atlas download instruction
#30
tashrifbillah
closed
3 years ago
2
Remove docs/flowchart*png
#29
tashrifbillah
closed
3 years ago
1
Delete docs/flowchart*png
#28
tashrifbillah
closed
3 years ago
1
tests/ needs a README.md
#27
tashrifbillah
closed
3 years ago
1
Log hashes of software used in each task
#26
tashrifbillah
closed
3 years ago
1
hcp<--provenance<--azure
#25
tashrifbillah
closed
3 years ago
1
Tracts reproducibility issue
#24
tashrifbillah
closed
3 years ago
0
Ask to clone pnlNipype alongside
#23
tashrifbillah
closed
3 years ago
1
Test infrastructure
#22
tashrifbillah
closed
3 years ago
0
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