pnlbwh multi-shell-dMRIharmonization issues

pnlbwh / multi-shell-dMRIharmonization

Harmonization of multi-shell diffusion MRI, an enhancement of https://github.com/pnlbwh/dMRIharmonization

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issues

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dead link to IITAtlas

#35 rcwelsh opened 8 months ago
2
Hcp aws

#34 RyanZurrin closed 1 year ago
2
Re-save separated shells?

#33 tashrifbillah closed 3 years ago
1
Correct gfa() and apply transforms in two steps

#32 tashrifbillah closed 3 years ago
2
Reporting reconstructed reference data in the csv files and png plots

#31 suheyla2 opened 3 years ago
0
[TODO] PR needed to fix #26 and #27

#30 tashrifbillah closed 3 years ago
0
Soft equivalence check

#29 tashrifbillah closed 3 years ago
0
HCP-EP data - error about inconsistency in spatial resolutions

#28 suheyla2 closed 3 years ago
10
antsApplyTransforms command issue

#27 suheyla2 closed 3 years ago
4
GFA from the dipy odf

#26 suheyla2 closed 3 years ago
2
replace /tmp with gettempdir()

#25 tashrifbillah closed 3 years ago
2
Warping issue

#24 hanscol closed 3 years ago
22
Error while plotting stats

#23 suheyla2 opened 3 years ago
2
Template construction error and possibly wrong nshm

#22 suheyla2 closed 3 years ago
10
[redundancy] Do not write approximated reference signal if already exists

#21 tashrifbillah closed 4 years ago
0
[consistency] Consider including _ToMNI substring

#20 tashrifbillah opened 4 years ago
2
smooth parameter

#19 suheyla2 closed 4 years ago
2
ref_bshell_bvalues.txt file tries to write to the template folder before creating the template folder

#18 suheyla2 closed 4 years ago
2
Fit shm ref

#17 tashrifbillah closed 4 years ago
0
Fix force

#16 tashrifbillah closed 4 years ago
0
setting smooth parameter for SH fitting to a smaller value

#15 suheyla2 closed 4 years ago
1
Example commands needed for multi-shell separate debug

#14 tashrifbillah closed 4 years ago
0
Feature request: approximate signal for reference site

#13 tashrifbillah closed 4 years ago
2
--force and preFlag don't mingle together

#12 tashrifbillah closed 4 years ago
3
FA, MD, GFA were not generated for the target site, dti folder is empty...

#11 suheyla2 closed 4 years ago
2
Decouple signal reconstruction and dti_harm computation

#10 tashrifbillah closed 4 years ago
3
do not glob transform files with *ToMNI* pattern during --create, structure outputs into csv, provide demonstrative plots

#9 tashrifbillah closed 4 years ago
1
Lower bshell measures being directly warped to MNI instead of template-->MNI

#8 tashrifbillah closed 4 years ago
3
harmonized diffusion measures don't exist

#7 suheyla2 closed 4 years ago
8
split path at .nii instead of just .

#6 tashrifbillah closed 4 years ago
1
File type

#5 suheyla2 closed 4 years ago
4
typecast bool('0') to int('0')

#4 tashrifbillah closed 4 years ago
2
print statistics at a later time without any computation

#3 tashrifbillah closed 4 years ago
2
Equip fa_skeleton_test.py to accept image list

#2 tashrifbillah closed 4 years ago
1
bval<B0_THRESH

#1 tashrifbillah closed 4 years ago
1