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pnlbwh / pnlNipype

PNL pipeline for NIFTI images
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nifti_fs hires flag #36

Closed sbouix closed 4 years ago

sbouix commented 4 years ago

Can we have the FreeSurfer script have the -hires flag from recon-all as an option and set it to "on" by default?

tashrifbillah commented 4 years ago

  1. FreeSurfer --hires flag requires an expert options file. https://surfer.nmr.mgh.harvard.edu/fswiki/SubmillimeterRecon

Should we provide one or take input for that?

  1. Enabling the flag would introduce -hires -expert expert_file.txt in all of the recon-all commands here. Please check if that is what we need.

tashrifbillah commented 4 years ago

@tashrifbillah figured out the answers.

Fixed by PR #38