Small typo with documentation

[sbouix]

In the global bashrc description:

• [x] dcm2niix export PATH=~/dcm2niix/build/bin should be export PATH=~/dcm2niix/build/bin:$PATH

• [x] Also /absolute/path/to/pnlNipype/exec shoudl be added to $PATH

• [x] Also it might be worth making this more generic as the paths with "~" may not be where the software is installed in each setup.

source ~/miniconda3/bin/activate                 # should intoduce '(base)' in front of each line
export FSLDIR=~/fsl                              # you may specify another directory where FreeSurfer is installed
export PATH=$PATH:$FSLDIR/bin
source $FSLDIR/etc/fslconf/fsl.sh
export FREESURFER_HOME=~/freesurfer              # you may specify another directory where FreeSurfer is installed
source $FREESURFER_HOME/SetUpFreeSurfer.sh
export $PATH=$PATH:/absolute/path/to/pnlNipype/scripts
export ANTSPATH=/path/to/ANTs/bin/
export PATH=$ANTSPATH:ANTs/Scripts:$PATH         # define ANTSPATH and export ANTs scripts in your path
export PATH=~/dcm2niix/build/bin
export PY2BIN=/absolute/path/to/miniconda2/bin   # for whitematteranalysis package

[tashrifbillah]

https://github.com/pnlbwh/pnlNipype#global-bashrc

[tashrifbillah]

FUTURE: generalize ~ to /abs/path/to. The change needs to be reflected in more than one place.

[tashrifbillah]

~/ generalized with /path/to in:

pnlNipype: https://github.com/pnlbwh/pnlNipype/commit/ffecef0a8959403e4770bbea2d3d0292cf82ed47

pnlpipe: https://github.com/pnlbwh/pnlpipe/commit/a27d0ee7615e8870b3802b2ec5423259e821da85