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pnlbwh / pnlpipe-containers

Containers for pnlpipe software
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MCR required #11

Closed tashrifbillah closed 3 years ago

tashrifbillah commented 3 years ago

MCR required

Running subfield segmentation scripts ---------------
#@# segmentHA_T1.sh Wed Dec 30 22:32:15 UTC 2020 --------------
Wed Dec 30 22:32:15 UTC 2020
cd /tmp/tmp19ghfkf0/sub-1004_ses-01_desc-XcMaN4_T1w/label
segmentHA_T1.sh sub-1004_ses-01_desc-XcMaN4_T1w

ERROR: cannot find Matlab 2014b runtime in location:

/home/pnlbwh/freesurfer-7.1.0/MCRv84

It is looking for either:
  bin/glnxa64/libmwlaunchermain.so    (Linux 64b) or
  bin/maci64/libmwlaunchermain.dylib (Mac 64b)

The hippocampal/amygdala and brainstem modules require the (free) Matlab runtime
.
You will need to download the Matlab Compiler Runtime (MCR) for Matlab 2014b.
To do so, please run the following commands (you might need root permissions):

LINUX:

cd /home/pnlbwh/freesurfer-7.1.0
curl "https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&
do=get&target=runtime2014bLinux.tar.gz" -o "runtime2014b.tar.gz"
tar xvf runtime2014b.tar.gz