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[tashrifbillah]

Minimum requirement to run PNL pipeline through containers

It might be useful in general for people to know how containers can be deployed either on a single machine or in distributed environments. Something like:

Single machine

• 4 cores, 16G of RAM, ability to run docker or singularity, 50G for the container image
• 20G/case of storage space.
• Running the full pipeline on one case takes X hours (Y hours for structural masking+freesurfer, Z hours for dMRI masking+artifact correction+ukf+white matter analysis).

Distributed environment:

• A Linux cluster with a job scheduler (LSF or SLURM)
• The ability for each compute node to run docker or singularity containers
• 20G/case of network attached storage

Munich collaborators have this equivalent to the above.

[tashrifbillah]

Suggestion from Sylvain on 7/16/2021 4:53 AM

[tashrifbillah]

Closed via PR #20