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pnlbwh / pnlpipe-containers

Containers for pnlpipe software
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Open MCRv84 permission #21

Open tashrifbillah opened 2 years ago

tashrifbillah commented 2 years ago

recon-all console print due to absence of/inability to access MCRv84:

cd /data/pnl/soft/pnlpipe3/fs7.1.0
curl "https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2014bLinux.tar.gz" -o "runtime2014b.tar.gz"
tar xvf runtime2014b.tar.gz

But then we found out that this MCR has restrictive permission--it does not let group members access it. I had to do:

cd fs7.1.0
chmod -R g+r MCRv84
chmod -R g+x MCRv84

to fix it.

The above solution may need to be added after:

https://github.com/pnlbwh/pnlpipe-containers/blob/ce0d793dd8dbccea2f805938424d7ffce57b9d71/Dockerfile.pnlpipe#L34-L37