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pnnl-predictive-phenomics
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csc009-gem
https://pnnl-predictive-phenomics.github.io/csc009-gem
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19 memote run with gapfilled, updated model
#28
tiekneeshrimp
opened
1 month ago
1
Clean update of csc009-gem from main branch with most recent file and script changes
#27
tiekneeshrimp
closed
1 month ago
1
18 addition of four elements to minimal media files and updating init.py to use model_gapfilled
#26
tiekneeshrimp
closed
1 month ago
0
Added four metabolites to minimal media files
#25
tiekneeshrimp
closed
1 month ago
3
Addition of four elements to minimal media files
#24
tiekneeshrimp
closed
1 month ago
0
Initial Curation of biolog data: adenosine
#23
tiekneeshrimp
closed
1 month ago
2
requirement.txt file is empty
#22
tiekneeshrimp
opened
1 month ago
0
Trying model run without update_model.py
#21
tiekneeshrimp
closed
1 month ago
0
Generated snapshot shows skipped reactions and skipped growth comparisons
#20
tiekneeshrimp
closed
1 month ago
1
Updating model to fix memote experimental growth erroring
#19
tiekneeshrimp
opened
1 month ago
12
unable to find/open json file generated after memote run
#18
tiekneeshrimp
closed
1 month ago
1
check that gapfill works on a minimal model first
#17
tiekneeshrimp
opened
1 month ago
0
update_model.py in csc009 needs relative pathway
#16
tiekneeshrimp
closed
1 month ago
2
Run memote diff on csc009
#15
tiekneeshrimp
closed
1 month ago
2
Added PM1 and Metablog results to biolog_carbon_curtobacterium1.csv
#14
tiekneeshrimp
closed
1 month ago
2
Update Biolog growth data with PM1 and Metablog results
#13
tiekneeshrimp
closed
1 month ago
0
Adding gapfill script and CarveMe Biolog Media
#12
mcnaughtonadm
closed
1 month ago
1
gapfill csc009-gem so that it is consistent with biolog
#11
djinnome
closed
1 month ago
0
Update experiments.yml
#10
mcnaughtonadm
closed
4 months ago
1
Update README.md
#9
mcnaughtonadm
closed
4 months ago
1
Update ghactions_deploy.sh
#8
mcnaughtonadm
closed
4 months ago
1
Modifying ghactions file and testing modified model
#7
VicTorres23
closed
4 months ago
2
Testing model and fixing a small bug on ghactions file.
#6
VicTorres23
closed
4 months ago
0
Editing .yml files and adding necessary files to run MEMOTE
#5
VicTorres23
closed
4 months ago
5
Reconfiguring MEMOTE
#4
VicTorres23
closed
4 months ago
0
Model updated with corrected chemical formulas of the metabolites and…
#3
VicTorres23
opened
5 months ago
1
Incorrect Chemical Formulas found in some Metabolites
#2
VicTorres23
opened
5 months ago
0
Confirm growth for the csc009-gem model
#1
djinnome
opened
5 months ago
5