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Refactor hackett
#22
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augeorge
opened
4 months ago
augeorge
commented
4 months ago
started refactoring hackett with the new pytensor from data function
wrote function to convert enzyme data file (for hackett) to dataclass expected by new function
wrote tests for the above conversion function
compared the shape of the original and refactored pytensors (log_en_t) are the same
calculated prior predictives for original and refactored (100 samples)
compared the resulting prior predictive for chi_obs is the same for the median, mean, and stdev distributions
augeorge
commented
4 months ago
still need to:
compare the prior predictives for vn_obs and log_en_t
check the ordering of metabolites for chi_obs
refactor hackett to use the noisy obs function
rerun comparisons
make a comparison integration test