search

pnnl / chgl

Chapel HyperGraph Library (CHGL) - HPC-class Hypergraphs in Chapel
https://pnnl.github.io/chgl/
MIT License
29 stars 8 forks source link

Provide correct Module entrypoint for Makefile #75

Closed buddha314 closed 4 years ago

buddha314 commented 4 years ago

I am using this Makefile to attempt to include CHGL. This approach has worked with other Chapel modules but I can't find the right entrypoint for CHGL.

CC=chpl
SRCDIR=src
BINDIR=target
CHGL_HOME=/mnt/c/Users/b/src/chgl/src
#CHGL_HOME=/mnt/c/Users/b/src/chgl/src/CHGL.chpl
#CHGL_HOME=/mnt/c/Users/b/src/chgl/
MODULES=-M$(CHGL_HOME)
EXEC=firsthgl

default=all

all: $(SRCDIR)/firstHgraph.chpl
    $(CC) $(MODULES) -o $(BINDIR)/$(EXEC) $<

I get the error

chpl -M/mnt/c/Users/b/src/chgl/src -o target/firsthgl src/firstHgraph.chpl
/mnt/c/Users/b/src/chgl/src/BinReader.chpl:16: In function 'binToHypergraph':
/mnt/c/Users/b/src/chgl/src/BinReader.chpl:32: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/BinReader.chpl:73: In function 'binToGraph':
/mnt/c/Users/b/src/chgl/src/BinReader.chpl:89: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Metrics.chpl:113: In function 'getVertexComponentMappings':
/mnt/c/Users/b/src/chgl/src/Metrics.chpl:116: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Metrics.chpl:117: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Metrics.chpl:191: In function 'getEdgeComponentMappings':
/mnt/c/Users/b/src/chgl/src/Metrics.chpl:194: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Metrics.chpl:195: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Generation.chpl:268: In function 'generateChungLu':
/mnt/c/Users/b/src/chgl/src/Generation.chpl:306: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Generation.chpl:464: In function 'generateBTER':
/mnt/c/Users/b/src/chgl/src/Generation.chpl:494: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:10: In iterator 'vertexBFS':
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:12: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:25: In iterator 'vertexBFS':
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:27: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:45: In iterator 'edgeBFS':
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:47: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:60: In iterator 'edgeBFS':
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:62: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:152: In function 'main':
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:153: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:28: In iterator 'doWorkLoop':
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:29: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:244: In initializer:
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:247: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:249: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:251: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:187: In function 'readWriteThis':
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:188: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:190: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:192: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:194: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:196: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:198: error: Attempt to 'new' a function or undefined symbol
/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:441: In initializer:
/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:432: error: 'Lock' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:478: In function 'equals':
/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:491: error: 'Utilities' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/BinReader.chpl:16: In function 'binToHypergraph':
/mnt/c/Users/b/src/chgl/src/BinReader.chpl:62: error: 'ssize_t' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/Utilities.chpl:374: error: 'size_t' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/Utilities.chpl:375: error: 'c_int' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/Utilities.chpl:507: In iterator 'getLines':
/mnt/c/Users/b/src/chgl/src/Utilities.chpl:508: error: 'iomode' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:4: In function 'visualize':
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:4: error: 'Graph' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:6: error: 'iomode' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:43: In function 'visualize':
/mnt/c/Users/b/src/chgl/src/Visualize.chpl:43: error: 'AdjListHyperGraph' undeclared (first use this function)
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:16: In iterator 'doWorkLoop':
/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:16: error: 'TerminationDetector' undeclared (first use this function)
make: *** [Makefile:13: all] Error 1

I'm assuming this means CHGL isn't including the dependencies. Do you know how to fix this or is the approach fundamentally wrong? Thanks!

jesunsahariar commented 4 years ago

Could you please tell us which Chapel version you are currently using to compile? CHGL currently only supports Chapel 1.20. Beyond v1.20, we know that Chapel has made fundamental changes in terms of visibility of modules. I suspect this may be causing the error you are seeing.

buddha314 commented 4 years ago

For sure! Also, I just re-built in response to this ticket: https://github.com/chapel-lang/chapel/issues/16285

chpl --version
chpl version 1.23.0 pre-release (1201483366)
Copyright 2020 Hewlett Packard Enterprise Development LP
Copyright 2004-2019 Cray Inc.
(See LICENSE file for more details)
jesunsahariar commented 4 years ago

Hi Brian. Unfortunately CHGL only supports Chapel 1.20 at this moment. Would it be possible to compile CHGL with Chapel 1.20? Apologies for any inconvenience.

mark-raugas commented 4 years ago

Can you let us know the output of chpl -version on your system? We are working with Cray on understanding better how to upgrade CHGL to 1.22 but it currently supports 1.20.

On Mon, Aug 24, 2020 at 16:08 Brian Dolan notifications@github.com wrote:

I am using this Makefile to attempt to include CHGL. This approach has worked with other Chapel modules but I can't find the right entrypoint for CHGL.

CC=chpl

SRCDIR=src

BINDIR=target

CHGL_HOME=/mnt/c/Users/b/src/chgl/src

CHGL_HOME=/mnt/c/Users/b/src/chgl/src/CHGL.chpl

CHGL_HOME=/mnt/c/Users/b/src/chgl/

MODULES=-M$(CHGL_HOME)

EXEC=firsthgl

default=all

all: $(SRCDIR)/firstHgraph.chpl

$(CC) $(MODULES) -o $(BINDIR)/$(EXEC) $<

I get the error

chpl -M/mnt/c/Users/b/src/chgl/src -o target/firsthgl src/firstHgraph.chpl

/mnt/c/Users/b/src/chgl/src/BinReader.chpl:16: In function 'binToHypergraph':

/mnt/c/Users/b/src/chgl/src/BinReader.chpl:32: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/BinReader.chpl:73: In function 'binToGraph':

/mnt/c/Users/b/src/chgl/src/BinReader.chpl:89: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Metrics.chpl:113: In function 'getVertexComponentMappings':

/mnt/c/Users/b/src/chgl/src/Metrics.chpl:116: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Metrics.chpl:117: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Metrics.chpl:191: In function 'getEdgeComponentMappings':

/mnt/c/Users/b/src/chgl/src/Metrics.chpl:194: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Metrics.chpl:195: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Generation.chpl:268: In function 'generateChungLu':

/mnt/c/Users/b/src/chgl/src/Generation.chpl:306: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Generation.chpl:464: In function 'generateBTER':

/mnt/c/Users/b/src/chgl/src/Generation.chpl:494: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:10: In iterator 'vertexBFS':

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:12: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:25: In iterator 'vertexBFS':

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:27: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:45: In iterator 'edgeBFS':

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:47: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:60: In iterator 'edgeBFS':

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:62: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:152: In function 'main':

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:153: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:28: In iterator 'doWorkLoop':

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:29: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:244: In initializer:

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:247: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:249: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:251: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:187: In function 'readWriteThis':

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:188: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:190: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:192: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:194: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:196: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AggregationBuffer.chpl:198: error: Attempt to 'new' a function or undefined symbol

/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:441: In initializer:

/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:432: error: 'Lock' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:478: In function 'equals':

/mnt/c/Users/b/src/chgl/src/AdjListHyperGraph.chpl:491: error: 'Utilities' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/BinReader.chpl:16: In function 'binToHypergraph':

/mnt/c/Users/b/src/chgl/src/BinReader.chpl:62: error: 'ssize_t' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/Utilities.chpl:374: error: 'size_t' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/Utilities.chpl:375: error: 'c_int' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/Utilities.chpl:507: In iterator 'getLines':

/mnt/c/Users/b/src/chgl/src/Utilities.chpl:508: error: 'iomode' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:4: In function 'visualize':

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:4: error: 'Graph' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:6: error: 'iomode' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:43: In function 'visualize':

/mnt/c/Users/b/src/chgl/src/Visualize.chpl:43: error: 'AdjListHyperGraph' undeclared (first use this function)

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:16: In iterator 'doWorkLoop':

/mnt/c/Users/b/src/chgl/src/WorkQueue.chpl:16: error: 'TerminationDetector' undeclared (first use this function)

make: *** [Makefile:13: all] Error 1

I'm assuming this means CHGL isn't including the dependencies. Do you know how to fix this or is the approach fundamentally wrong? Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/pnnl/chgl/issues/75, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD5T6HFMIRL3USWSKTSMVLTSCLXHDANCNFSM4QKAGUFQ .

jesunsahariar commented 4 years ago

@mark-raugas: Brian is currently compiling with Chapel v 1.23

For sure! Also, I just re-built in response to this ticket: chapel-lang/chapel#16285

chpl --version
chpl version 1.23.0 pre-release (1201483366)
Copyright 2020 Hewlett Packard Enterprise Development LP
Copyright 2004-2019 Cray Inc.
(See LICENSE file for more details)
github-actions[bot] commented 4 years ago

This issue is stale and should either be closed or eventually resolved.