pnnl / chgl

Chapel HyperGraph Library (CHGL) - HPC-class Hypergraphs in Chapel
https://pnnl.github.io/chgl/
MIT License
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Unable to build with Chapel 1.22.1 and 1.22.0 #79

Closed lnikon closed 3 years ago

lnikon commented 4 years ago

Can't build any of unit tests inside chgl/test.

$ chpl --version > chpl version 1.22.1 Copyright 2020 Hewlett Packard Enterprise Development LP Copyright 2004-2019 Cray Inc. (See LICENSE file for more details)

Trying to build with the following command: $ chpl -M ../src --no-lifetime-checking --no-warnings GraphTest.chpl

Getting following output: > GraphTest.chpl:5: error: Attempt to 'new' a function or undefined symbol ../src/BinReader.chpl:16: In function 'binToHypergraph': ../src/BinReader.chpl:32: error: Attempt to 'new' a function or undefined symbol ../src/BinReader.chpl:73: In function 'binToGraph': ../src/BinReader.chpl:89: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:113: In function 'getVertexComponentMappings': ../src/Metrics.chpl:118: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:119: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:199: In function 'getEdgeComponentMappings': ../src/Metrics.chpl:202: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:203: error: Attempt to 'new' a function or undefined symbol ../src/Generation.chpl:268: In function 'generateChungLu': ../src/Generation.chpl:306: error: Attempt to 'new' a function or undefined symbol ../src/Generation.chpl:464: In function 'generateBTER': ../src/Generation.chpl:494: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:10: In iterator 'vertexBFS': ../src/Traversal.chpl:12: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:25: In iterator 'vertexBFS': ../src/Traversal.chpl:27: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:45: In iterator 'edgeBFS': ../src/Traversal.chpl:47: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:60: In iterator 'edgeBFS': ../src/Traversal.chpl:62: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol ../src/Visualize.chpl:152: In function 'main': ../src/Visualize.chpl:153: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:28: In iterator 'doWorkLoop': ../src/WorkQueue.chpl:29: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:244: In initializer: ../src/WorkQueue.chpl:247: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:249: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:251: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:187: In function 'readWriteThis': ../src/AggregationBuffer.chpl:188: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:190: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:192: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:194: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:196: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:198: error: Attempt to 'new' a function or undefined symbol ../src/AdjListHyperGraph.chpl:441: In initializer: ../src/AdjListHyperGraph.chpl:432: error: 'Lock' undeclared (first use this function) ../src/AdjListHyperGraph.chpl:478: In function 'equals': ../src/AdjListHyperGraph.chpl:491: error: 'Utilities' undeclared (first use this function) ../src/BinReader.chpl:16: In function 'binToHypergraph': ../src/BinReader.chpl:62: error: 'ssize_t' undeclared (first use this function) ../src/Utilities.chpl:374: error: 'size_t' undeclared (first use this function) ../src/Utilities.chpl:375: error: 'c_int' undeclared (first use this function) ../src/Utilities.chpl:507: In iterator 'getLines': ../src/Utilities.chpl:508: error: 'iomode' undeclared (first use this function) ../src/Visualize.chpl:4: In function 'visualize': ../src/Visualize.chpl:4: error: 'Graph' undeclared (first use this function) ../src/Visualize.chpl:6: error: 'iomode' undeclared (first use this function) ../src/Visualize.chpl:43: In function 'visualize': ../src/Visualize.chpl:43: error: 'AdjListHyperGraph' undeclared (first use this function) ../src/WorkQueue.chpl:16: In iterator 'doWorkLoop': ../src/WorkQueue.chpl:16: error: 'TerminationDetector' undeclared (first use this function)

Update

Tried to build with Chapel 1.22.0 as described inside dependencies. Got linker errors: /usr/bin/ld: /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(chpl-comm.o):(.bss+0x10): multiple definition ofchpl_comm_diags_disable_flag'; /tmp/chpl-nikon-95422.deleteme/CHGLTest.tmp.o:(.bss+0x58): first defined here /usr/bin/ld: /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(chpl-comm.o):(.bss+0x20): multiple definition of chpl_comm_diags_counters'; /tmp/chpl-nikon-95422.deleteme/CHGLTest.tmp.o:(.bss+0x0): first defined here /usr/bin/ld: /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(chpl-comm-diags.o):(.bss+0xc): multiple definition ofchpl_comm_diags_disable_flag'; /tmp/chpl-nikon-95422.deleteme/CHGLTest.tmp.o:(.bss+0x58): first defined here /usr/bin/ld: /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(chpl-comm-diags.o):(.bss+0x20): multiple definition of chpl_comm_diags_counters'; /tmp/chpl-nikon-95422.deleteme/CHGLTest.tmp.o:(.bss+0x0): first defined here /usr/bin/ld: /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(chpl-comm-callbacks.o):(.bss+0x0): multiple definition ofchpl_comm_callback_counts'; /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(comm-none.o):(.bss+0x0): first defined here /usr/bin/ld: /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(chpl-tasks-callbacks.o):(.bss+0x0): multiple definition of chpl_task_callback_counts'; /home/nikon/projects/chapel-1.20.0/lib/linux64/gnu/x86_64/arch-native/loc-flat/comm-none/tasks-qthreads/tmr-generic/unwind-none/mem-jemalloc/atomics-cstdlib/hwloc/re2/fs-none/lib_pic-none/libchpl.a(tasks-qthreads.o):(.bss+0x18): first defined here collect2: error: ld returned 1 exit status make: *** [/home/nikon/projects/chapel-1.20.0/runtime/etc/Makefile.exe:30: /tmp/chpl-nikon-95422.deleteme/CHGLTest.tmp] Error 1 error: compiling generated source

LouisJenkinsCS commented 4 years ago

Please see branch containing partially complete conversions. https://github.com/pnnl/chgl/tree/1.23-port

Sent from Samsung tablet.

-------- Original message -------- From: Vahag Bejanyan notifications@github.com Date: 10/25/20 3:49 AM (GMT-05:00) To: pnnl/chgl chgl@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [pnnl/chgl] Unable to build with Chapel 1.22.1 (#79)

Can't build any of unit tests inside chgl/test.

$ chpl --version

chpl version 1.22.1 Copyright 2020 Hewlett Packard Enterprise Development LP Copyright 2004-2019 Cray Inc. (See LICENSE file for more details)

Trying to build with the following command: $ chpl -M ../src --no-lifetime-checking --no-warnings GraphTest.chpl

Getting following output:

GraphTest.chpl:5: error: Attempt to 'new' a function or undefined symbol ../src/BinReader.chpl:16: In function 'binToHypergraph': ../src/BinReader.chpl:32: error: Attempt to 'new' a function or undefined symbol ../src/BinReader.chpl:73: In function 'binToGraph': ../src/BinReader.chpl:89: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:113: In function 'getVertexComponentMappings': ../src/Metrics.chpl:118: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:119: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:199: In function 'getEdgeComponentMappings': ../src/Metrics.chpl:202: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:203: error: Attempt to 'new' a function or undefined symbol ../src/Generation.chpl:268: In function 'generateChungLu': ../src/Generation.chpl:306: error: Attempt to 'new' a function or undefined symbol ../src/Generation.chpl:464: In function 'generateBTER': ../src/Generation.chpl:494: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:10: In iterator 'vertexBFS': ../src/Traversal.chpl:12: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:25: In iterator 'vertexBFS': ../src/Traversal.chpl:27: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:45: In iterator 'edgeBFS': ../src/Traversal.chpl:47: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:60: In iterator 'edgeBFS': ../src/Traversal.chpl:62: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol ../src/Visualize.chpl:152: In function 'main': ../src/Visualize.chpl:153: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:28: In iterator 'doWorkLoop': ../src/WorkQueue.chpl:29: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:244: In initializer: ../src/WorkQueue.chpl:247: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:249: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:251: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:187: In function 'readWriteThis': ../src/AggregationBuffer.chpl:188: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:190: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:192: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:194: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:196: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:198: error: Attempt to 'new' a function or undefined symbol ../src/AdjListHyperGraph.chpl:441: In initializer: ../src/AdjListHyperGraph.chpl:432: error: 'Lock' undeclared (first use this function) ../src/AdjListHyperGraph.chpl:478: In function 'equals': ../src/AdjListHyperGraph.chpl:491: error: 'Utilities' undeclared (first use this function) ../src/BinReader.chpl:16: In function 'binToHypergraph': ../src/BinReader.chpl:62: error: 'ssize_t' undeclared (first use this function) ../src/Utilities.chpl:374: error: 'size_t' undeclared (first use this function) ../src/Utilities.chpl:375: error: 'c_int' undeclared (first use this function) ../src/Utilities.chpl:507: In iterator 'getLines': ../src/Utilities.chpl:508: error: 'iomode' undeclared (first use this function) ../src/Visualize.chpl:4: In function 'visualize': ../src/Visualize.chpl:4: error: 'Graph' undeclared (first use this function) ../src/Visualize.chpl:6: error: 'iomode' undeclared (first use this function) ../src/Visualize.chpl:43: In function 'visualize': ../src/Visualize.chpl:43: error: 'AdjListHyperGraph' undeclared (first use this function) ../src/WorkQueue.chpl:16: In iterator 'doWorkLoop': ../src/WorkQueue.chpl:16: error: 'TerminationDetector' undeclared (first use this function)

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mark-raugas commented 4 years ago

Yes – CHGL currently only supports Chapel 1.20.

Also please be aware CHGL is research code that will not have the full performance you might expect in the distributed case. It has been developed from 2018 to 2020 and is an effort that was useful in providing feedback to the Chapel language team at HPE Cray.

Active CHGL development by our team is planned to end shortly.

From: Louis Jenkins notifications@github.com Sent: Sunday, October 25, 2020 5:53 AM To: pnnl/chgl chgl@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [pnnl/chgl] Unable to build with Chapel 1.22.1 and 1.22.0 (#79)

Please see branch containing partially complete conversions. https://github.com/pnnl/chgl/tree/1.23-port

Sent from Samsung tablet.

-------- Original message -------- From: Vahag Bejanyan <notifications@github.com mailto:notifications@github.com > Date: 10/25/20 3:49 AM (GMT-05:00) To: pnnl/chgl <chgl@noreply.github.com mailto:chgl@noreply.github.com > Cc: Subscribed <subscribed@noreply.github.com mailto:subscribed@noreply.github.com > Subject: [pnnl/chgl] Unable to build with Chapel 1.22.1 (#79)

Can't build any of unit tests inside chgl/test.

$ chpl --version

chpl version 1.22.1 Copyright 2020 Hewlett Packard Enterprise Development LP Copyright 2004-2019 Cray Inc. (See LICENSE file for more details)

Trying to build with the following command: $ chpl -M ../src --no-lifetime-checking --no-warnings GraphTest.chpl

Getting following output:

GraphTest.chpl:5: error: Attempt to 'new' a function or undefined symbol ../src/BinReader.chpl:16: In function 'binToHypergraph': ../src/BinReader.chpl:32: error: Attempt to 'new' a function or undefined symbol ../src/BinReader.chpl:73: In function 'binToGraph': ../src/BinReader.chpl:89: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:113: In function 'getVertexComponentMappings': ../src/Metrics.chpl:118: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:119: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:199: In function 'getEdgeComponentMappings': ../src/Metrics.chpl:202: error: Attempt to 'new' a function or undefined symbol ../src/Metrics.chpl:203: error: Attempt to 'new' a function or undefined symbol ../src/Generation.chpl:268: In function 'generateChungLu': ../src/Generation.chpl:306: error: Attempt to 'new' a function or undefined symbol ../src/Generation.chpl:464: In function 'generateBTER': ../src/Generation.chpl:494: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:10: In iterator 'vertexBFS': ../src/Traversal.chpl:12: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:25: In iterator 'vertexBFS': ../src/Traversal.chpl:27: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:28: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:45: In iterator 'edgeBFS': ../src/Traversal.chpl:47: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:60: In iterator 'edgeBFS': ../src/Traversal.chpl:62: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol ../src/Traversal.chpl:63: error: Attempt to 'new' a function or undefined symbol ../src/Visualize.chpl:152: In function 'main': ../src/Visualize.chpl:153: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:28: In iterator 'doWorkLoop': ../src/WorkQueue.chpl:29: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:244: In initializer: ../src/WorkQueue.chpl:247: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:249: error: Attempt to 'new' a function or undefined symbol ../src/WorkQueue.chpl:251: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:187: In function 'readWriteThis': ../src/AggregationBuffer.chpl:188: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:190: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:192: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:194: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:196: error: Attempt to 'new' a function or undefined symbol ../src/AggregationBuffer.chpl:198: error: Attempt to 'new' a function or undefined symbol ../src/AdjListHyperGraph.chpl:441: In initializer: ../src/AdjListHyperGraph.chpl:432: error: 'Lock' undeclared (first use this function) ../src/AdjListHyperGraph.chpl:478: In function 'equals': ../src/AdjListHyperGraph.chpl:491: error: 'Utilities' undeclared (first use this function) ../src/BinReader.chpl:16: In function 'binToHypergraph': ../src/BinReader.chpl:62: error: 'ssize_t' undeclared (first use this function) ../src/Utilities.chpl:374: error: 'size_t' undeclared (first use this function) ../src/Utilities.chpl:375: error: 'c_int' undeclared (first use this function) ../src/Utilities.chpl:507: In iterator 'getLines': ../src/Utilities.chpl:508: error: 'iomode' undeclared (first use this function) ../src/Visualize.chpl:4: In function 'visualize': ../src/Visualize.chpl:4: error: 'Graph' undeclared (first use this function) ../src/Visualize.chpl:6: error: 'iomode' undeclared (first use this function) ../src/Visualize.chpl:43: In function 'visualize': ../src/Visualize.chpl:43: error: 'AdjListHyperGraph' undeclared (first use this function) ../src/WorkQueue.chpl:16: In iterator 'doWorkLoop': ../src/WorkQueue.chpl:16: error: 'TerminationDetector' undeclared (first use this function)

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github-actions[bot] commented 3 years ago

This issue is stale and should either be closed or eventually resolved.