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pnorbert / adiosvm

Packages and howtos for creating a linux system for ADIOS tutorials
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DISPLAY issue #42

Open tongshu83 opened 5 years ago

tongshu83 commented 5 years ago

Could you please add import matplotlib matplotlib.use('agg') before "import matplotlib.pyplot as plt" in gsplot.py and pdfplot.py ? Otherwise, the following issue appear.

$ mpiexec -n 1 python3 plot/gsplot.py -i gs.bp -o BPgsplot/img GS Plot step 0 processing simulation output step 0 or computation step 10 /soft/anaconda3/5.2.0/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216, got 192 return f(*args, kwds) Traceback (most recent call last): File "plot/gsplot.py", line 139, in Plot2D ('yz', data, args, fullshape, sim_step[0], fontsize) File "plot/gsplot.py", line 42, in Plot2D fig = plt.figure(1, figsize=(8,8)) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/pyplot.py", line 548, in figure kwargs) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backend_bases.py", line 161, in new_figure_manager return cls.new_figure_manager_given_figure(num, fig) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backend_bases.py", line 167, in new_figure_manager_given_figure canvas = cls.FigureCanvas(figure) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backends/backend_qt5agg.py", line 24, in init super(FigureCanvasQTAgg, self).init(figure=figure) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backends/backend_qt5.py", line 234, in init _create_qApp() File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backends/backend_qt5.py", line 125, in _create_qApp raise RuntimeError('Invalid DISPLAY variable') RuntimeError: Invalid DISPLAY variable

$ mpiexec -n 2 python3 plot/pdfplot.py -i pdf.bp -o BPpdfplot/fig PDF Plot step 0 processing analysis step 0 simulation step 10 /soft/anaconda3/5.2.0/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216, got 192 return f(*args, *kwds) /soft/anaconda3/5.2.0/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216, got 192 return f(args, kwds) Traceback (most recent call last): File "plot/pdfplot.py", line 113, in PlotPDF (pdf, bins, args, start, count, sim_step[0], fontsize) File "plot/pdfplot.py", line 35, in PlotPDF fig = plt.figure(1, figsize=(8,8)) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/pyplot.py", line 548, in figure kwargs) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backend_bases.py", line 161, in new_figure_manager return cls.new_figure_manager_given_figure(num, fig) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backend_bases.py", line 167, in new_figure_manager_given_figure canvas = cls.FigureCanvas(figure) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backends/backend_qt5agg.py", line 24, in init super(FigureCanvasQTAgg, self).init(figure=figure) File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backends/backend_qt5.py", line 234, in init _create_qApp() File "/soft/anaconda3/5.2.0/lib/python3.6/site-packages/matplotlib/backends/backend_qt5.py", line 125, in _create_qApp raise RuntimeError('Invalid DISPLAY variable') RuntimeError: Invalid DISPLAY variable