pnrobinson / loinc2hpoMiner

Loinc2Hpo Miner
GNU General Public License v3.0
1 stars 1 forks source link

Exception while saving new annotation #10

Closed pnrobinson closed 2 years ago

pnrobinson commented 2 years ago

Unsure why we are tyring to read the file in when the user presses save -- something is miswired.

Loinc2HpoRuntimeException: Malformed line with 8 fields: 600-7  s   NOMINAL NEG HP:0031864      HPO:nvasilevsky[2018-05-10] .
    at org.monarchinitiative.loinc2hpocore.annotation.Loinc2HpoAnnotation.fromAnnotationLine(Loinc2HpoAnnotation.java:111)
    at org.monarchinitiative.loinc2hpocore.io.Loinc2HpoAnnotationParser.importAnnotations(Loinc2HpoAnnotationParser.java:44)
    at org.monarchinitiative.loinc2hpocore.io.Loinc2HpoAnnotationParser.<init>(Loinc2HpoAnnotationParser.java:31)
    at org.monarchinitiative.loinc2hpo.OptionalResources.getLoincAnnotations(OptionalResources.java:89)
pnrobinson commented 2 years ago

fixed