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hidden_markov_modeling
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Refactor final
#34
pockerman
closed
4 years ago
0
Multivariate gaussian
#33
pockerman
closed
4 years ago
0
Multivariate gaussian
#32
pockerman
closed
4 years ago
0
remove fastafile from pileup
#31
colinveal
closed
4 years ago
0
changed GC calculation for sample
#30
colinveal
closed
4 years ago
0
Adaptation to new bam file read
#29
pockerman
closed
4 years ago
0
Separate clustering from training
#28
pockerman
closed
4 years ago
0
25 kdecluster densities
#27
pockerman
closed
4 years ago
0
25 kdecluster densities
#26
pockerman
closed
4 years ago
0
KDE for clusters densities
#25
pockerman
opened
4 years ago
0
23 review window creation
#24
pockerman
closed
4 years ago
0
Review window creation
#23
pockerman
closed
4 years ago
0
Refactor code base
#22
pockerman
closed
4 years ago
0
Add no wga observations
#21
pockerman
closed
4 years ago
0
Create hmm sim with three common states
#20
pockerman
closed
4 years ago
0
Create hmm sim with three common states
#19
pockerman
closed
4 years ago
0
#13 Add quality threshold
#18
pockerman
closed
4 years ago
0
probability distribution for the states
#17
colinveal
opened
4 years ago
4
Create HMM simulation with three common states
#16
pockerman
closed
4 years ago
3
Add save/load window data as json
#15
pockerman
closed
4 years ago
2
Add save/load HMM model in json or...
#14
pockerman
closed
4 years ago
0
Add quality threshold for reads
#13
pockerman
closed
4 years ago
9
notes
#12
pockerman
opened
4 years ago
0
Evaluate pomgranate
#11
pockerman
closed
4 years ago
2
Make everything upper case when extracting common bases
#10
pockerman
opened
4 years ago
0
Verify HMM model implementation
#9
pockerman
closed
4 years ago
0
Scale forward-backward algorithm
#8
pockerman
closed
4 years ago
0
Understand data representation with BAM files
#7
pockerman
closed
4 years ago
0
Baum-Welch algorithm
#6
pockerman
closed
4 years ago
0
Viterbi algorithm for learning
#5
pockerman
closed
4 years ago
0
Backward algorithm for HMM
#4
pockerman
closed
4 years ago
0
Forward algorithm for HMM
#3
pockerman
closed
4 years ago
0
Literature survey
#2
pockerman
closed
4 years ago
0
Clean up old scripts
#1
pockerman
closed
4 years ago
0