Closed pstetz closed 11 months ago
Hello,
For some subjects we have, parts of the brain are cut off instead of the face (see below images). However, pydeface seems to work when the image is reoriented first
You should be able to reproduce this issue by doing
curl https://patrickstetz.com/pydeface/in.nii.gz --output in.nii.gz singularity run --cleanenv -B ./:/tmp/0 docker://poldracklab/pydeface pydeface ./in.nii.gz
Would be happy to help by submitting a PR for this!!
Best, Patrick
Looks like this is already reported in #9
@pstetz , thanks for opening this issue :+1: . You are welcome to submit a pull request.
Hello,
For some subjects we have, parts of the brain are cut off instead of the face (see below images). However, pydeface seems to work when the image is reoriented first
You should be able to reproduce this issue by doing
Input Image
After defacing
Defacing after reorienting first
Would be happy to help by submitting a PR for this!!
Best, Patrick