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ds000254-fmriprep: OSError: Duplicate node name "func_preproc_task_bilateralfingertapping_echo_1_wf" found. #24

Closed jbwexler closed 1 year ago

jbwexler commented 2 years ago

This showed up in all the stderr files for ds000254.

Matplotlib created a temporary config/cache directory at /tmp/matplotlib-ktj6ea9p because the default path (/home/fmriprep/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Process Process-2: Traceback (most recent call last): File "/opt/conda/lib/python3.9/multiprocessing/process.py", line 315, in _bootstrap self.run() File "/opt/conda/lib/python3.9/multiprocessing/process.py", line 108, in run self._target(*self._args, **self._kwargs) File "/opt/conda/lib/python3.9/site-packages/fmriprep/cli/workflow.py", line 118, in build_workflow retval["workflow"] = init_fmriprep_wf() File "/opt/conda/lib/python3.9/site-packages/fmriprep/workflows/base.py", line 89, in init_fmriprep_wf single_subject_wf = init_single_subject_wf(subject_id) File "/opt/conda/lib/python3.9/site-packages/fmriprep/workflows/base.py", line 379, in init_single_subject_wf workflow.connect([ File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/workflows.py", line 161, in connect self._check_nodes(newnodes) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/workflows.py", line 769, in _check_nodes raise IOError('Duplicate node name "%s" found.' % node.name) OSError: Duplicate node name "func_preproc_task_bilateralfingertapping_echo_1_wf" found.

effigies commented 2 years ago

Almost certainly both nii and nii.gz files for the same task.

effigies commented 1 year ago

This dataset contains a copy of itself nested inside it. We should delete and re-release.

https://openneuro.org/datasets/ds000254/versions/00002

jbwexler commented 1 year ago

Just deleted nested version and released new snapshot: https://openneuro.org/datasets/ds000254/versions/1.0.0