poldracklab / tacc-openneuro

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ds002311-mriqc: "Exception raised while executing Node non_steady_state_detector" #48

Open jbwexler opened 1 year ago

jbwexler commented 1 year ago

For about 25% of subjects:

Node: mriqc_wf.funcMRIQC.non_steady_state_detector Working directory: /scratch1/03201/jbwexler/work_dir/mriqc/ds002311_sub-19/mriqc_wf/funcMRIQC/_infile..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds002311-mriqc..sourcedata..raw..sub-19..func..sub-19_task-mot_run-01_bold.nii.gz/non_steady_state_detector

Node inputs:

in_file = /scratch1/03201/jbwexler/openneuro_derivatives/derivatives/mriqc/ds002311-mriqc/sourcedata/raw/sub-19/func/sub-19_task-mot_run-01_bold.nii.gz

Traceback (most recent call last): File "/opt/conda/lib/python3.9/site-packages/mriqc/engine/plugin.py", line 60, in run_node result["result"] = node.run(updatehash=updatehash) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 524, in run result = self._run_interface(execute=True) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 642, in _run_interface return self._run_command(execute) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command raise NodeExecutionError( nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node non_steady_state_detector.

Traceback (most recent call last): File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/base/core.py", line 398, in run runtime = self._run_interface(runtime) File "/opt/conda/lib/python3.9/site-packages/nipype/algorithms/confounds.py", line 984, in _run_interface in_nii = nb.load(self.inputs.in_file) File "/opt/conda/lib/python3.9/site-packages/nibabel/loadsave.py", line 55, in load raise ImageFileError(f'Cannot work out file type of "{filename}"') nibabel.filebasedimages.ImageFileError: Cannot work out file type of "/scratch1/03201/jbwexler/openneuro_derivatives/derivatives/mriqc/ds002311-mriqc/sourcedata/raw/sub-19/func/sub-19_task-mot_run-01_bold.nii.gz"