Open jbwexler opened 1 year ago
also for a few subjects in ds002994
Simply trying to set the qform from the sform in the image did not hit this problem. Worth re-running a subject to see if it's reliable.
I reran the two failed subjects from ds003454 and got the same errors.
Also getting this for a few subjects in ds004299. Any ideas?
TODO: Write patched python module to bind into container.
Patch: https://github.com/nipy/nibabel/pull/1227
To use:
datalad install -d . -s https://github.com/effigies/nibabel.git --branch enh/catch_svd_failure code/nibabel
SINGULARITYENV_PYTHONPATH="$PWD/code/nibabel" <reproman command>
@yarikoptic, just to verify, reproman will pass through these variables? Or do we need to do something like REPROENV_SINGULARITYENV_PYTHONPATH
to make sure it gets through?
to say the truth I don't remember -- I will need to try later on. If you have env handy -- just give it a shot and see.
For 2 of 24 subjects: