poldracklab / tacc-openneuro

0 stars 1 forks source link

ds003550-fmriprep: "IndexError: boolean index did not match indexed array along dimension 0; dimension is 39 but corresponding boolean dimension is 64" #70

Open jbwexler opened 1 year ago

jbwexler commented 1 year ago

Only happened for sub-sc002:

sub-sc001: 07:21:45 succeeded Node: fmriprep_23_0_wf.single_subject_sc002_wf.fmap_preproc_wf.fmap_reports_wf_auto_00001.fmap_rpt Working directory: /scratch1/03201/jbwexler/work_dir/fmriprep/ds003550_sub-sc002/fmriprep_23_0_wf/single_subject_sc002_wf/fmap_preproc_wf/fmap_reports_wf_auto_00001/fmap_rpt

Node inputs:

apply_mask = False fieldmap = mask = max_alpha = 0.7 moving = moving_label = Fieldmap (Hz) out_report = report.svg reference = reference_label = Reference show = 1

Traceback (most recent call last): File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node result["result"] = node.run(updatehash=updatehash) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run result = self._run_interface(execute=True) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface return self._run_command(execute) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node fmap_rpt.

Traceback: Traceback (most recent call last): File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/base/core.py", line 398, in run runtime = self._post_run_hook(runtime) File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/mixins/reporting.py", line 50, in _post_run_hook self._generate_report() File "/opt/conda/lib/python3.9/site-packages/sdcflows/interfaces/reportlets.py", line 103, in _generate_report abs(np.percentile(fmapdata[maskdata], 99.8)), IndexError: boolean index did not match indexed array along dimension 0; dimension is 39 but corresponding boolean dimension is 64

jbwexler commented 2 months ago

Just ran into this for ds003772 sub-tq315. @effigies any ideas?