ds003540-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node ICA."

[jbwexler]

For 6/32 subjects.

Node: mriqc_wf.funcMRIQC.ICA Working directory: /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/_infile..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/ICA

Node inputs:

ICs = approach = args = bg_image = bg_threshold = compress_report = False cov_weight = dim = dim_est = environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'} epsilon = epsilonS = in_files = log_power = mask = max_restart = maxit = migp = migpN = migp_factor = migp_shuffle = mix = mm_thresh = no_bet = True no_mask = True no_mm = True non_linearity = num_ICs = out_all = out_dir = out_mean = out_orig = Node: mriqc_wf.funcMRIQC.ICA Working directory: /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/_infile..scratch1..03201..jbwexler..openn euro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/ICA

Node inputs:

ICs = approach = args = bg_image = bg_threshold = compress_report = False cov_weight = dim = dim_est = environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'} epsilon = epsilonS = in_files = log_power = mask = max_restart = maxit = migp = migpN = migp_factor = migp_shuffle = mix = mm_thresh = no_bet = True no_mask = True no_mm = True non_linearity = num_ICs = out_all = out_dir = out_mean = out_orig = out_pca = out_report = melodic_reportlet.svg out_stats = out_unmix = out_white = output_type = NIFTI_GZ pbsc = rem_cmp = remove_deriv = report = report_maps = report_mask = s_con = s_des = sep_vn = sep_whiten = smode = t_con = t_des = tr_sec = update_mask = var_norm =

Traceback (most recent call last): File "/opt/conda/lib/python3.9/site-packages/mriqc/engine/plugin.py", line 60, in run_node result["result"] = node.run(updatehash=updatehash) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run result = self._run_interface(execute=True) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface return self._run_command(execute) File "/opt/conda/lib/python3.9/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node ICA.

Cmdline: melodic -i /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/_infile..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/sanitize/sub-13_task-rest_acq-MB3PA_bold_valid.nii.gz --nobet --nomask --no_mm -o /scratch1/03201/jbwexler/work_dir/mriqc/ds003540_sub-13/mriqc_wf/funcMRIQC/_infile..scratch1..03201..jbwexler..openneuro_derivatives..derivatives..mriqc..ds003540-mriqc..sourcedata..raw..sub-13..func..sub-13_task-rest_acq-MB3PA_bold.nii.gz/ICA Stdout:

Stderr:

Traceback: Traceback (most recent call last): File "/opt/conda/lib/python3.9/site-packages/nipype/interfaces/base/core.py", line 399, in run runtime = self._post_run_hook(runtime) File "/opt/conda/lib/python3.9/site-packages/niworkflows/interfaces/reportlets/segmentation.py", line 169, in _post_run_hook self._generate_report() File "/opt/conda/lib/python3.9/site-packages/niworkflows/interfaces/reportlets/segmentation.py", line 184, in _generate_report plot_melodic_components( File "/opt/conda/lib/python3.9/site-packages/niworkflows/viz/utils.py", line 675, in plot_melodic_components titlefmt(id=i + 1, noise=" [noise]" * is_noise, var=stats[i, 1]), IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed