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ds004443-mriqc: "Exception raised while executing Node non_steady_state_detector." #87

Open jbwexler opened 2 months ago

jbwexler commented 2 months ago

Similar errors occurred for most subjects:



Traceback (most recent call last):
  File "/opt/conda/lib/python3.11/site-packages/mriqc/engine/plugin.py", line 64, in run_node
    result['result'] = node.run(updatehash=updatehash)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node non_steady_state_detector.

Traceback:
        Traceback (most recent call last):
          File "/opt/conda/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 397, in run
            runtime = self._run_interface(runtime)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nipype/algorithms/confounds.py", line 992, in _run_interface
            in_nii.dataobj[:, :, :, :50].mean(axis=0).mean(axis=0).mean(axis=0)
            ~~~~~~~~~~~~~~^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/arrayproxy.py", line 463, in __getitem__
            return self._get_scaled(dtype=None, slicer=slicer)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/arrayproxy.py", line 424, in _get_scaled
            scaled = apply_read_scaling(self._get_unscaled(slicer=slicer), scl_slope, scl_inter)
                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/arrayproxy.py", line 403, in _get_unscaled
            return fileslice(
                   ^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/fileslice.py", line 779, in fileslice
            arr_data = read_segments(fileobj, segments, n_bytes, lock)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/nibabel/fileslice.py", line 671, in read_segmen
ts
            raise ValueError('Whoops, not enough data in file')
        ValueError: Whoops, not enough data in file```