Adding mpileup usage to analyse bams for base percentages

polio-nanopore / piranha

GNU General Public License v3.0

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Adding mpileup usage to analyse bams for base percentages #102

Closed Desperate-Dan closed 1 year ago

Desperate-Dan commented 1 year ago

Added some functions to use pysam's mpileup instead of gofasta for analysing the base composition at every position for each set of produced bam files.