now makes heatmap coocc matrix that gets generated from the bam mpileup variation code by @Desperate-Dan. allows removal of the separate coocc calculation pipeline w gofasta psuedoalignment.
haven't tested speed, but predict this will be a significant speed up from previous.
now makes heatmap coocc matrix that gets generated from the bam mpileup variation code by @Desperate-Dan. allows removal of the separate coocc calculation pipeline w gofasta psuedoalignment. haven't tested speed, but predict this will be a significant speed up from previous.