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polio-nanopore / piranha

GNU General Public License v3.0
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Copy fastq data and barcodes CSV to output folder for storage and archiving #215

Closed rambaut closed 5 months ago

rambaut commented 5 months ago

It is likely that the fastq.pass data will need to be archived and stored long term. It would make sense if Piranha were to copy this to the output folder (or to another location) with a name and possibly other details for the run.

aineniamh commented 5 months ago

Done on main now, use --archive-fastq flag to trigger writing fastq_pass to outdir and use --archivedir if you want to overwrite the default output place and put them somewhere special.