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polio-nanopore / piranha

GNU General Public License v3.0
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New install issue - Snakemake and PuLP conflict #234

Open Desperate-Dan opened 5 months ago

Desperate-Dan commented 5 months ago

There is an issue currently with the latest version of PuLP and its use in Snakemake which looks something like this issue. This only affects new installs of piranha where the PuLP version is >2.7.0. Presumably this will get fixed by the Snakemake team so probably not necessary to permanently pin the PuLP version, but if this issue occurs for anyone else, changing the PuLP version after following the piranha installation guide should do the trick:

pip install pulp==2.7.0

aineniamh commented 5 months ago

Sounds good! If you want to make a branch and PR to fix it, that would be great!