polio-nanopore / piranha

GNU General Public License v3.0
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Fix Dockerfile #237

Closed rmcolq closed 1 month ago

rmcolq commented 3 months ago

This now works locally. I think the biggest problem in the end was pyabpoa. Removing it from the environment file didn't seem to be enough and I needed to pip uninstall and reinstall to get it to work.

I've specified a few different versions of things. Tensorflow 2.10 seems to cause problems, needs to be conda installed 2.11. The numpy version also seemed to be a problem in one iteration/test of the file so I've fixed it to a slightly different version. All other versions are just slightly updated and probably could be the old numbers but I didn't want to spend more time working out if we could use older versions once I found a working combination.

rmcolq commented 3 months ago

Not fixed