polio-nanopore / piranhaGUI

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read in excel spreadsheet #11

Open aineniamh opened 7 months ago

aineniamh commented 7 months ago

read the file in as an excel file- do some checking select the barcode,sample find the negative and positive check there aren't duplicates

qc

write the file out to the temp folder make sure to write out all columns to this file (use csv.DictWriter and just write out the fieldnames of the DictReader when parsing the file?). ALso remember to handle line termination. Perhaps we can allow tsv or csv.

Prepopulated template be able to parse that format

aineniamh commented 7 months ago

populate the field first via this spreadsheet- if it's empty, or they want to edit it afterwards they can do that too