Open jsha129 opened 1 year ago
Please check https://www.yfish.org/display/PUB/Accucopy#Accucopy-cnv.output.tsv
cp is the total copy number. major_allele_cp is the copy number for the major allele (=major_cn of Pyclone VI?).
We are not familiar with PYClone VI...
-- Yu S. Huang http://www.yfish.org/ https://sites.google.com/site/polyactis/
On Wed, Nov 9, 2022 at 2:07 PM Jaynish Shah @.***> wrote:
Hi there, thank you for developing accucopy. it was relatively straight forward to run and fast! How do we prepare input for pyclone-vi (example: https://github.com/Roth-Lab/pyclone-vi/blob/master/examples/tracerx.tsv) from cnv.output.tsv? Specifically, how do we get major_cn and minor_cn? I think pyclone-vi only accepts integer values for both. Thanks
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Hi there, thank you for developing accucopy. it was relatively straight forward to run and fast! How do we prepare input for pyclone-vi (example: https://github.com/Roth-Lab/pyclone-vi/blob/master/examples/tracerx.tsv) from
cnv.output.tsv
? Specifically, how do we get major_cn and minor_cn? I think pyclone-vi only accepts integer values for both. Thanks