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pombase / canto

The PomBase community curation tool
https://curation.pombase.org
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triage options #1458

Open ValWood opened 6 years ago

ValWood commented 6 years ago

Need a set of triage options for PHI-Canto (can start with ours)

from @kimrutherford The triage options are in the config file, but they are written into the database when a new Canto instance is created. Henry's test Canto will have the PomBase options.

The triage options can be added to the Canto database after the instance is created but it's easier to get them sorted out up front as much as possible.

ValWood commented 6 years ago

Alayne also mentioned that PHI-Base molecular interactions collaborators curate in "batches" It would be nice to be able to "label" paper as being in a specific "batch" (this might be for later, but we should discuss possibilities)

ValWood commented 6 years ago

from Kim

< The triage options can be added to the Canto database after the instance is created but it's easier to get them sorted out up front as much as possible.

The initial triage options are here: https://github.com/PHI-base/canto/blob/e2e11ea7eea00a1dd81a1d26545910b47e543a31/canto.yaml#L248

As an example, to add a new triage option called "New triage option" to an existing Canto:

./canto/script/canto_docker script/canto_add.pl \
    --cvterm 'Canto publication triage status' 'New triage option' \
    Canto:new_triage_option

(Split over multiple lines for easy reading)

ValWood commented 6 years ago

first need to discuss how PHI-Base want to use triage options

ValWood commented 5 years ago

As this is admin am making low priority