Canto won't let you use IPI with Chitin binding

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Canto won't let you use IPI with Chitin binding #1741

Closed ValWood closed 5 years ago

ValWood commented 5 years ago

Are there any config changes we can make to allow IPI for non-protein substrates?

mah11 commented 5 years ago

No, because GO requires a gene product ID in the 'with' column for IPI. (It can be any gene product, so for ncRNAs, use the gene ID as proxy, same as we do for proteins.)

ValWood commented 5 years ago

OK this is for chitin fragments so it isn't really a gene product. We'll use IDA...

mah11 commented 5 years ago

Fragments have nothing to do with it; chitin is never a gene product.

mah11 commented 5 years ago

OK, that last comment kinda does my head in, but I'm pretty sure it's orthogonal to the reason IPI doesn't work for chitin binding.

ValWood commented 5 years ago

OK revised comment I did not know that you could only use IPI with a gene product...

mah11 commented 5 years ago

really? it's been that way forever ...