triage sorting/ curatable reviews

[pombase-admin]

No urgency yet. I am over 1/2 way through the first pass triage. When I get nearer the end I'll raise the priority of this (this is just a reminder for me)

Find out if any papers classified as review have been triaged as curatable (some may be OK, but I might deprioritise these)

Original comment by: ValWood

[pombase-admin]

Upping priority as I am through the first pass triage. Have I flagged any reviews as curatable?

Original comment by: ValWood

[pombase-admin]

• priority: 5 --> 7

Original comment by: ValWood

[pombase-admin]

• summary: triage sorting --> triage sorting/ curatable reviews

Original comment by: ValWood

[pombase-admin]

There are no curatable reviews. It would be wrong if there were any because reviews aren't curatable. If they were curatable they would have the status "curatable" rather than "Review or comment".

Or am I not understanding the question?

Original comment by: kimrutherford

[pombase-admin]

Yep ;) badly explained

we have a triage flag "review" which I have been using if something was clearly a review.

There is also a "review flag" which can be imported from Pubmed. I wondered If I had missed any of the "imported" review flag, and assigned some "review from PubMed" as curatable.

It isn't a big deal if I have becase when we come to curte them we will find out and wreassign the "triage type" to review. so no need to do this really. i was just curius and it is quick (in fact, I thought you did it before when I was only a little way into the triage, but maybe I am wrong?)

Original comment by: ValWood

[pombase-admin]

Ah, I forgot about the flag from pubmed. The ones you want are listed below. Some of them didn't look like reviews to me, but I checked a few and it matches pubmed's web site.

This query: select uniquename, title from pub, cvterm triage_status, cvterm pubmed_type where pub.triage_status_id = triage_status.cvterm_id and pub.pubmed_type = pubmed_type.cvterm_id and pubmed_type.name = 'review' and triage_status.name = 'Curatable';

Gave me: PMID:8878833|M-factor, a farnesylated mating factor from the fission yeast Schizosaccharomyces pombe. PMID:22084378|Nutrient limitations alter cell division control and chromosome segregation through growth-related kinases and phosphatases. PMID:22064471|Physical breakdown of the nuclear envelope is not necessary for breaking its barrier function. PMID:22025288|Cellular senescence and tumor suppressor gene p16. PMID:21804323|[Cell surface protein Ecm33 is involved in negative feedback regulation of MAP kinase signalling and development of the in vivo real-time monitoring of MAP kinase signalling]. PMID:21572561|3' processing of eukaryotic precursor tRNAs. PMID:21271286|Ringing the changes: emerging roles for DASH at the kinetochore-microtubule Interface. PMID:21195141|Global genome organization mediated by RNA polymerase III-transcribed genes in fission yeast. PMID:19308696|Condensin: Architect of mitotic chromosomes. PMID:15897182|Two distinct pathways responsible for the loading of CENP-A to centromeres in the fission yeast cell cycle. PMID:15897177|Shugoshin protects cohesin complexes at centromeres. PMID:15282184|Structural insight into the cooperativity between catalytic and noncatalytic sites of F1-ATPase. PMID:14643439|Apoptosis-like yeast cell death in response to DNA damage and replication defects. PMID:12825973|[Mechanisms of degradation of the fungal ornithine decarboxylase]. PMID:11710979|Cellular signalling and the complexity of biological timing: insights from the ultradian clock of Schizosaccharomyces pombe. PMID:10931913|Analysis of the splicing machinery in fission yeast: a comparison with budding yeast and mammals. PMID:9601013|Multiple epigenetic events regulate mating-type switching of fission yeast.

Original comment by: kimrutherford

[pombase-admin]

• assigned_to: nobody --> kim_rutherford

Original comment by: kimrutherford

[pombase-admin]

Actually I'll probably leave all these in for now. Most look like they will have some data.

Thanks

val

Original comment by: ValWood

[pombase-admin]

We're good here.

Original comment by: ValWood

[pombase-admin]

• status: open --> closed

Original comment by: ValWood