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Hide gene and organims columns from all genotype and phenotype tables in Fly-canto #1914

Closed vmt25 closed 5 years ago

vmt25 commented 5 years ago

Please hide the gene column from the genotype and phenotype tables in Fly-canto. Please also hide the organims column from the phenotype tables in Fly-canto.

These are not necessary because both the organism and the gene symbols are encapsulated in the full allele symbol, in the form of: species abreviation\gene symbol[allelename]

For Drosophila melanogaster genes, the species abbreviation is ommited.

e.g. Scer\GAL4[VP16.nos.UTR] Scer is the abreviation of the species saccharomyces cerevisiae (even though Canto assumes all species are Drosophila melanogaster) GAL4 is the gene symbol VP16.nos.UTR is the allele name

e.g. grau[QE70] is a Dmel gene grau is the gene symbol QE70 is the allele name

kimrutherford commented 5 years ago

Please hide the gene column from the genotype and phenotype tables in Fly-canto. Please also hide the organims column from the phenotype tables in Fly-canto.

I think these are done now. I added an option ("show_genotype_management_genes_list") for hiding the genes a while ago but forgot to comment.

Hiding the organisms needed a configuration change which I've just made to the flybase-test Canto.

Vitor, here are the settings in case you'd like to add them to your local Canto:

show_genotype_management_genes_list: 1

instance_organism:
   taxonid: 7227

(The spaces before "taxonid:" are needed.)

vmt25 commented 5 years ago

Hi. Looks good. FlyCanto is not showing the organisms anymore but the gene is still showing up - did you push the config into fly-canto? (but this is not a priority, so no worries)

kimrutherford commented 5 years ago

FlyCanto is not showing the organisms anymore but the gene is still showing up - did you push the config into fly-canto?

I removed the genes table at the left but forgot about the genes column. I'll remove that column next time I'm working on the genotypes table.

vmt25 commented 5 years ago

Thanks!

kimrutherford commented 5 years ago

Hiding the organisms needed a configuration change which I've just made to the flybase-test Canto.

Unfortunately that triggered a bug in the annotation editing dialog which made it unusable. So I've changed the configuration back temporarily while I fix the problem.

kimrutherford commented 5 years ago

Unfortunately that triggered a bug in the annotation editing dialog which made it unusable. So I've changed the configuration back temporarily while I fix the problem

That's fixed so the organism is not shown in the annotation tables any more.

kimrutherford commented 5 years ago

I think this is done now. Please re-open or open new issues if there other places that need fixing.