pombase / canto

The PomBase community curation tool
https://curation.pombase.org
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Make it obvious if an allele of a genotype has a "comment" #2545

Open ValWood opened 2 years ago

ValWood commented 2 years ago

I was looking for a few of these to fix, and they are tricky to locate in big sessions with lots of similar alleles. I suggest a small link in the genotype panel (i.e like the one we plan to add to the phenotype panel to access the GIs)

It would also make it more obvious if a comment existed when I fied some alleles. For example, I missed this one: Allele numbering PMID:15173383 are based on the Pignede sequence (off by 2) 44ae5ece389a1b0a cdc6-C1043A(C1043A)[Wild_type] Allele numbering PMID:15173383 are based on the Pignede sequence (off by 2) 44ae5ece389a1b0a cdc6-C1058S(C1058S)[Wild_type] Allele numbering PMID:15173383 are based on the Pignede sequence (off by 2) 44ae5ece389a1b0a cdc6-C1053A(C1053A)[Wild_type] Allele numbering PMID:15173383 are based on the Pignede sequence (off by 2) 44ae5ece389a1b0a cdc6-C1058A(C1058A)[Wild_type] Allele numbering PMID:15173383 are based on the Pignede sequence (off by 2) 44ae5ece389a1b0a cdc6-C1040A(C1040A)[Wild_type]

when I aligned these alleles with the current sequence- these are now synonyms because the same allele is named this way in other papers ( I left the comment because it is useful)

ValWood commented 2 years ago

Low priority because there aren't many and I can see/review them all in the 2 files

kimrutherford commented 3 months ago

Just to be clear: these are genotype comments not allele comments/notes

ValWood commented 3 months ago

Yep, I need to review them and move many of them over to allele comments one those are visible. Most of them probably apply to alleles.