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Fix duplicate alleles in Canto sessions #2778

Closed kimrutherford closed 8 months ago

kimrutherford commented 8 months ago

While working on pombase/canto#2776 I noticed that there are some duplicated alleles in the sessions.

Sometimes the duplicate isn't visible in the web interface because they are part of multi-locus genotypes. For example, "ade6-M210" here: https://curation.pombase.org/pombe/curs/0bd070642c31ebd4/genotype_manage/ro There are two database entries for that allele.

Sometimes they are obvious, like "cps8-188" here: https://curation.pombase.org/pombe/curs/588296c78358a92c/genotype_manage/ro

I'll merge the duplicates in the Canto database.

Here's the list:

session allele_name
https://curation.pombase.org/pombe/curs/0bd070642c31ebd4/genotype_manage/ro ade6-M210
https://curation.pombase.org/pombe/curs/167fcf5adceaa9f8/genotype_manage/ro clr4-S5
https://curation.pombase.org/pombe/curs/35c498b7a5ea246c/genotype_manage/ro dis2-11
https://curation.pombase.org/pombe/curs/39e9205957ce5637/genotype_manage/ro cgs1-1
https://curation.pombase.org/pombe/curs/588296c78358a92c/genotype_manage/ro cps8-188
https://curation.pombase.org/pombe/curs/69acd91fe4ac8649/genotype_manage/ro mcs4-13
https://curation.pombase.org/pombe/curs/817e75f5ee938916/genotype_manage/ro cut6-621
https://curation.pombase.org/pombe/curs/c641c32144a9fceb/genotype_manage/ro top2-110
https://curation.pombase.org/pombe/curs/c641c32144a9fceb/genotype_manage/ro top2-175
https://curation.pombase.org/pombe/curs/c641c32144a9fceb/genotype_manage/ro top2-437
https://curation.pombase.org/pombe/curs/d5b7ba156ee750c8/genotype_manage/ro cut5-T401
https://curation.pombase.org/pombe/curs/dc80ed40f3a61b23/genotype_manage/ro mis6-302
https://curation.pombase.org/pombe/curs/e0f7d8e22ba14953/genotype_manage/ro orp1-4
https://curation.pombase.org/pombe/curs/ec1e2e8292ae5f6e/genotype_manage/ro mal2-1
https://curation.pombase.org/pombe/curs/ef61ac1ac91c951e/genotype_manage/ro cdc1-7
https://curation.pombase.org/pombe/curs/ef61ac1ac91c951e/genotype_manage/ro wee1-6
kimrutherford commented 8 months ago

We have an open issue that's related:

kimrutherford commented 8 months ago

I'll merge the duplicates in the Canto database. Here's the list:

I checked and the alleles in that table will all be fixed when we apply the script from pombase/canto#2642

So I'll close this.