cant add CDT modified residue in Canto

[ValWood]

I wanted to make these more specific rpb1 modifications more specific so that they would group correctly in the protein viewer

oddly, they weren't in the session (even as existing), so they must come from the reciprocal of the CTD kinase S2 and S5 kinase annotations which is super impressive!

anyway the curation interface doesn't accept CTD_S2/5, I was able to work around using the "text" editor. This isn't a priority, as it only applies to rpb1 and I can do them by hand, but in case it is easy...

[ValWood]

Although oddly these don't get instantiated as modifications:

[ValWood]

note to self, tomorrow these should be merged:

[kimrutherford]

Looks good!

[ValWood]

even better!

[ValWood]

Do you know why there are still 2 phosphorylation sites per position? I looked on the web page, and I cant see which annotations are causing this?

[kimrutherford]

Aren't these the annotations?

[ValWood]

I thought I fixed the, and I see this:

[kimrutherford]

There are some phosphorylated residue annotations are only visible in the detailed view.

[ValWood]

OK! I thought I checked that. I will fix these on Monday

[ValWood]

In the curation session they look like this:

will check on Monday

[kimrutherford]

Confusing!

I found them in pombe-embl/supporting_files/legacy_modifications_from_contigs.tsv after a bit of looking:

SPBC28F2.12     rpb1    MOD:00696       Inferred from Direct Assay      CTD_S2  added_by(PomBase:SPBC32H8.10)  PMID:19328067   4896    2009-07-12
SPBC28F2.12     rpb1    MOD:00696       Inferred from Direct Assay      CTD_S5  added_by(PomBase:SPBC19F8.07)  PMID:19328067   4896    2009-07-12
SPBC28F2.12     rpb1    MOD:00696       Inferred from Direct Assay      CTD_S2  added_by(PomBase:SPAC2F3.15)   PMID:19328067   4896    2009-07-12
SPBC28F2.12     rpb1    MOD:00696       Inferred from Direct Assay      CTD_S5  added_by(PomBase:SPBC32H8.10)  PMID:19328067   4896    2009-07-12

[ValWood]

fixed , with some others