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The PomBase community curation tool
https://curation.pombase.org
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How to know when a session has been accepted #2833

Closed jseager7 closed 4 months ago

jseager7 commented 6 months ago

Does Canto have any way to notify admin curators when a session is started by a community curator, even if that session hasn't been sent out to the community curator by an admin curator in advance?

Currently, the only way we know to check this is in the list of publications in the the Canto admin interface.

@ValWood Do you normally get this information as part of the daily summary email that Canto is meant to send? Because I'm not sure if we've ever received this with PHI-Canto.

CC @CuzickA

ValWood commented 6 months ago

I think I would only know this from the email , but I don't think it ever happens ;)

If it did that session would just become one of the 'in progress' sessions and dealt with in the usual way.

jseager7 commented 6 months ago

Thanks. @CuzickA Have you ever seen this daily summary email in the curation inbox?

kimrutherford commented 6 months ago

@jseager7 the daily summary runs from a cron job. Do you have that set up?

PomBase has something like this in the crontab of the user that runs Canto:

40 1 * * * (cd $CANTO_DIR; ./script/canto_daily.pl http://curation.pombase.org/pombe)

You may need some shenanigans to run the script with Docker. To make sure it's working, you can also run the script from the command line in the Canto directory.

You'll probably need https://canto.phi-base.org/ as the argument to the script to make sure the links in the email work for you.

It's possible to view the contents of the daily summary email by going to https://canto.phi-base.org/tools/daily_summary (It's a bit slow so you might have to wait a bit)

Let me know if I can help with anything.

CuzickA commented 6 months ago

Thanks. @CuzickA Have you ever seen this daily summary email in the curation inbox?

@jseager7, I haven't had a daily summary email in the curation inbox. I don't think we ever connected the curation email box to PHI-Canto.

kimrutherford commented 5 months ago

Hi @jseager7

Have you had any luck with this?

The first thing to try is this on the command line to see if an email is sent:

(cd $CANTO_DIR; ./script/canto_daily.pl http://curation.pombase.org/pombe)

(with your URL)

Or something like this with Docker:

canto/script/canto_docker ./script/canto_daily.pl http://curation.pombase.org/pombe

You'll need to set admin_address in canto_deploy.yaml.

jseager7 commented 5 months ago

@kimrutherford I just haven't had time to get round to this yet, sorry. I should have some time to look into it today or later this week though.

jseager7 commented 5 months ago

I've confirmed that I can access the daily report via the Canto website and I've added a call to the daily report script in our daily update script. I'll check whether an email is delivered tomorrow morning.

ValWood commented 4 months ago

Hi @jseager7 can we close? v

jseager7 commented 4 months ago

Yes, I'll close this since the question's been answered. I still haven't confirmed whether emails are working on our server but that's a separate issue.