Closed pombase-admin closed 9 years ago
I still don't know how this could happen except when the ontology update runs at stupid o'clock. I'll keep thinking.
Original comment by: kimrutherford
transferring from https://sourceforge.net/tracker/?func=detail&aid=3561245&group\_id=65526&atid=2525791
I have never seen this before I was adding the MF GO:0016887 to curs e73b6293989d19a9 and got: Internal error DBIx::Class::ResultSet::delete(): DBI Exception: DBD::SQLite::st execute failed: database is locked [for Statement "DELETE FROM cursprop WHERE ( ( ( curs = ? AND type = ? ) AND curs = ? ) )"] at lib/PomCur/Track/StatusStorage.pm line 109
Original comment by: ValWood
Same error here: transferred from https://sourceforge.net/tracker/index.php?func=detail&aid=3564994&group\_id=65526&atid=2525791
I tried to edit a phenotype annotation to add a condition, and it all seemed to go fine until I hit 'add', and got this:
Internal error DBIx::Class::ResultSet::delete(): DBI Exception: DBD::SQLite::st execute failed: database is locked [for Statement "DELETE FROM cursprop WHERE ( ( ( curs = ? AND type = ? ) AND curs = ? ) )"] at lib/PomCur/Track/StatusStorage.pm line 109 Error There has been an internal error. The problem has been logged and will be investigated.
It's http://curation.pombase.org/pombe/curs/982304b134332abd/annotation/process\_alleles/18
Original comment by: ValWood
Original comment by: ValWood
Original comment by: ValWood
I think I've fixed this. Has anyone seen a problem like this recently?
Original comment by: kimrutherford
Original comment by: ValWood
No will open new if we do val
Original comment by: ValWood
I've just fixed a bug that was occasionally causing "database is locked" when running the tests on the server, but not on my laptop. It took a while to track down.
http://en.wikipedia.org/wiki/Heisenbug
I was seeing the bug in the tests but I think it could have happened in the live site too. I'm fairly sure it's fixed now. As usual, let me know if you spot any problems.
Original comment by: kimrutherford
This was definately caused by having the session open in 2 windows
happened when selecting phenotype term curs/45dd89cc4951b51a/annotation/edit/12/phenotype#c=FYPO%3A0001214&s=sensitito+potas
Gene: spt7 Questions? Contact curators ... Internal error DBIx::Class::ResultSet::delete(): DBI Exception: DBD::SQLite::st execute failed: database is locked [for Statement "DELETE FROM cursprop WHERE ( ( ( curs = ? AND type = ? ) AND curs = ? ) )"] at lib/PomCur/Track/StatusStorage.pm line 109 There has been an internal error. The problem has been logged and will be investigated.
Original comment by: ValWood