quick: documentation small text update

[pombase-admin]

Documentation http://curation.pombase.org/demo/docs/

Here we have

Curating specific data types

You can curate any of these types of data for any gene you have put on the list for the paper (follow links for specific instructions):

GO molecular function: A molecular function is a catalytic (e.g. protein serine/threonine kinase activity, pyruvate carboxylase activity) or binding activity, or any other activity that occurs at the molecular level.
GO biological process: A biological process is series of events accomplished by one or more ordered assemblies of molecular functions.
GO cellular component: Cellular components include subcellular structures and macromolecular complexes, such as nucleus, nuclear inner membrane, nuclear pore, and proteasome complex.
phenotype: A phenotype is any observable characteristic or trait of an organism; such as its morphology, development, biochemical or physiological properties, behaviour, and products of behaviour.
protein modification: A protein modification is a covalent modification or other change that alters the measured molecular mass of a peptide or protein amino acid residue

We should add examples for process and phenotypes? they haven't got one

Original comment by: ValWood

[pombase-admin]

Plugging in the examples from the Canto interface yields:

GO biological process: A biological process is series of events accomplished by one or more ordered assemblies of molecular functions, such as cell cycle, transport, or signal transduction.

phenotype: A phenotype is any observable characteristic or trait of an organism; such as its morphology, development, biochemical or physiological properties, behaviour, and products of behaviour. Examples: multinucleate, abnormal spindle, inviable.

I'd be happy to edit the relevant file in github, but I couldn't tell which was the right one (sorry if that's a symptom that I'm a numpty).

Another nit-picky thing: the phenotype one shouldn't have that semicolon.

Original comment by: mah11

[pombase-admin]

a small text change? not urgent but leaving it here...

Original comment by: ValWood

[pombase-admin]

I'd be happy to edit the relevant file in github, but I couldn't tell which was the right one

Here's the right place: https://github.com/pombase/canto/blob/master/canto.yaml#L1438

Almost all the configuration is in "canto.yaml".

If you can edit it yourself that would be great, but I'm happy to help.

If you make changes let me know and I'll re-release Canto.

Sorry it's taken me nearly 2 years to look at this ticket.

Original comment by: kimrutherford

[pombase-admin]

LOL. Thanks for the link. I'm mired in multi-allele slides for Japan today but I can do these edits tomorrow. I'll comment here again when I'm done.

cheers, m

Original comment by: mah11

[pombase-admin]

• status: open --> closed-fixed
• assigned_to: Midori Harris

Original comment by: mah11

[pombase-admin]

done!

Original comment by: mah11