pombase / canto

The PomBase community curation tool
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link to Bioportal from FYPO is not ontology view #664

Closed pombase-admin closed 9 years ago

pombase-admin commented 10 years ago

the link just goes to the FYPO main page

http://bioportal.bioontology.org/ontologies/FYPO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO%3A0001879#visualization

Links from Pombase use this URL format, which works... http://bioportal.bioontology.org/ontologies/FYPO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO_0001005&t=visualization

Original comment by: ValWood

pombase-admin commented 10 years ago

Original comment by: kimrutherford

pombase-admin commented 10 years ago

I've fixed the configuration. I think. I've changed the link but the bioportal site currently says "This website is under heavy load" so I can't be sure.

The change will happen when I update the main tool tonight. I'll close this ticket once I've check that it works.

Original comment by: kimrutherford

pombase-admin commented 10 years ago

This duplicated [curation-tool:#591], so I'll close that one too.

Original comment by: mah11

pombase-admin commented 10 years ago

It still goes to the old page for me.This is the link we use from PomBase if it helps v

http://bioportal.bioontology.org/ontologies/FYPO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO_0000051&t=visualization

Original comment by: ValWood

pombase-admin commented 10 years ago

Original comment by: ValWood

pombase-admin commented 10 years ago

What a pain. I put the term ID "FYPO:0000051" in the URL, but Bioportal needs an underscore instead of a ":". I'll put in a special case for them.

Original comment by: kimrutherford

pombase-admin commented 10 years ago

Fixed, but not released in the main tool yet. Will be fixed next time I update. I'm not updating straight away as I've been making some serious changes to the ontology update procedure and it needs more testing.

(The change is in the test Canto, but the test Canto is currently unwell due to a botched ontology update.)

Original comment by: kimrutherford

pombase-admin commented 10 years ago

Original comment by: kimrutherford