Canto down

[pombase-admin]

The error message is quite scary:

Internal error DBIx::Class::ResultSet::find(): DBI Exception: DBD::SQLite::db prepare_cached failed: disk I/O error [for Statement "SELECT me.metadata_id, me.key, me.value FROM metadata me WHERE ( me.key = ? )"] at lib/Canto/Role/MetadataAccess.pm line 99 Internal error Caught exception in Canto::Controller::Curs->gene "DBIx::Class::ResultSet::find(): DBI Exception: DBD::SQLite::db prepare_cached failed: disk I/O error [for Statement "SELECT me.gene_id, me.primary_identifier, me.organism FROM gene me WHERE ( me.gene_id = ? )"] at lib/Canto/DB.pm line 187 : at lib/Canto/Controller/Curs.pm line 2601 Canto::Controller::Curs::gene('Canto::Controller::Curs=HASH(0x5ba2238)', 'Canto=HASH(0x84b74a8)', 1) called at /usr/local/share/perl/5.10.1/Catalyst/Action.pm line 65 Catalyst::Action::execute('Catalyst::Action=HASH(0x6134350)', 'Canto::Controller::Curs=HASH(0x5ba2238)', 'Canto=HASH(0x84b74a8)', 1) called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1668 eval {...} called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1668 Catalyst::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x6134350)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/Authorization/ACL.pm line 38 Catalyst::Plugin::Authorization::ACL::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x6134350)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/StackTrace.pm line 22 Catalyst::Plugin::StackTrace::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x6134350)') called at /usr/local/share/perl/5.10.1/Catalyst/Action.pm line 60 Catalyst::Action::dispatch('Catalyst::Action=HASH(0x6134350)', 'Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst/ActionChain.pm line 38 Catalyst::ActionChain::dispatch('Catalyst::ActionChain=HASH(0x82ce4e0)', 'Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst/Controller.pm line 158 Catalyst::Controller::_ACTION('Canto::Controller::Curs=HASH(0x5ba2238)', 'Canto=HASH(0x84b74a8)', 1) called at /usr/local/share/perl/5.10.1/Catalyst/Action.pm line 65 Catalyst::Action::execute('Catalyst::Action=HASH(0x607c9e8)', 'Canto::Controller::Curs=HASH(0x5ba2238)', 'Canto=HASH(0x84b74a8)', 1) called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1668 eval {...} called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1668 Catalyst::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x607c9e8)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/Authorization/ACL.pm line 38 Catalyst::Plugin::Authorization::ACL::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x607c9e8)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/StackTrace.pm line 22 Catalyst::Plugin::StackTrace::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x607c9e8)') called at /usr/local/share/perl/5.10.1/Catalyst/Action.pm line 60 Catalyst::Action::dispatch('Catalyst::Action=HASH(0x607c9e8)', 'Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst/Dispatcher.pm line 257 Catalyst::Dispatcher::_do_forward('Catalyst::Dispatcher=HASH(0x37c2450)', 'forward', 'Canto=HASH(0x84b74a8)', '_ACTION') called at /usr/local/share/perl/5.10.1/Catalyst/Dispatcher.pm line 237 Catalyst::Dispatcher::forward('Catalyst::Dispatcher=HASH(0x37c2450)', 'Canto=HASH(0x84b74a8)', '_ACTION') called at /usr/local/share/perl/5.10.1/Catalyst.pm line 358 Catalyst::forward('Canto=HASH(0x84b74a8)', '_ACTION') called at /usr/local/share/perl/5.10.1/Catalyst/Controller.pm line 132 Catalyst::Controller::_DISPATCH('Canto::Controller::Curs=HASH(0x5ba2238)', 'Canto=HASH(0x84b74a8)', 1) called at /usr/local/share/perl/5.10.1/Catalyst/Action.pm line 65 Catalyst::Action::execute('Catalyst::Action=HASH(0x607c160)', 'Canto::Controller::Curs=HASH(0x5ba2238)', 'Canto=HASH(0x84b74a8)', 1) called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1668 eval {...} called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1668 Catalyst::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x607c160)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/Authorization/ACL.pm line 38 Catalyst::Plugin::Authorization::ACL::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x607c160)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/StackTrace.pm line 22 Catalyst::Plugin::StackTrace::execute('Canto=HASH(0x84b74a8)', 'Canto::Controller::Curs', 'Catalyst::Action=HASH(0x607c160)') called at /usr/local/share/perl/5.10.1/Catalyst/Action.pm line 60 Catalyst::Action::dispatch('Catalyst::Action=HASH(0x607c160)', 'Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst/Dispatcher.pm line 257 Catalyst::Dispatcher::_do_forward('Catalyst::Dispatcher=HASH(0x37c2450)', 'forward', 'Canto=HASH(0x84b74a8)', '/curs/_DISPATCH') called at /usr/local/share/perl/5.10.1/Catalyst/Dispatcher.pm line 237 Catalyst::Dispatcher::forward('Catalyst::Dispatcher=HASH(0x37c2450)', 'Canto=HASH(0x84b74a8)', '/curs/_DISPATCH') called at /usr/local/share/perl/5.10.1/Catalyst.pm line 358 Catalyst::forward('Canto=HASH(0x84b74a8)', '/curs/_DISPATCH') called at /usr/local/share/perl/5.10.1/Catalyst/Dispatcher.pm line 105 Catalyst::Dispatcher::dispatch('Catalyst::Dispatcher=HASH(0x37c2450)', 'Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1614 Catalyst::dispatch('Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/PageCache.pm line 140 Catalyst::Plugin::PageCache::dispatch('Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst/Plugin/Static/Simple.pm line 76 Class::MOP::Class:::around('CODE(0x3a3c8e8)', 'Canto=HASH(0x84b74a8)') called at /usr/local/lib/perl/5.10.1/Class/MOP/Method/Wrapped.pm line 162 Class::MOP::Method::Wrapped::ANON('Canto=HASH(0x84b74a8)') called at /usr/local/lib/perl/5.10.1/Class/MOP/Method/Wrapped.pm line 91 Canto::dispatch('Canto=HASH(0x84b74a8)') called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1964 Catalyst::ANON() called at /usr/local/share/perl/5.10.1/Try/Tiny.pm line 76 eval {...} called at /usr/local/share/perl/5.10.1/Try/Tiny.pm line 67 Try::Tiny::try('CODE(0x69437f0)', 'Try::Tiny::Catch=REF(0x7ff0e90)') called at /usr/local/share/perl/5.10.1/Catalyst.pm line 1970 Catalyst::handle_request('Canto', 'env', 'HASH(0x87d04a8)', 'response_cb', 'CODE(0x8709a50)') called at /usr/local/share/perl/5.10.1/Catalyst/Engine.pm line 685 Catalyst::Engine::ANON('CODE(0x8709a50)') called at /usr/local/share/perl/5.10.1/Plack/Util.pm line 324 Plack::Util::ANON('CODE(0x7b789a8)') called at /usr/local/share/perl/5.10.1/Starman/Server.pm line 257 Starman::Server::process_request('Starman::Server=HASH(0x64cfce8)') called at /usr/local/share/perl/5.10.1/Net/Server.pm line 141 Net::Server::run_client_connection('Starman::Server=HASH(0x64cfce8)') called at /usr/local/share/perl/5.10.1/Net/Server/PreFork.pm line 273 eval {...} called at /usr/local/share/perl/5.10.1/Net/Server/PreFork.pm line 273 Net::Server::PreFork::run_child('Starman::Server=HASH(0x64cfce8)') called at /usr/local/share/perl/5.10.1/Net/Server/PreFork.pm line 229 Net::Server::PreFork::run_n_children('Starman::Server=HASH(0x64cfce8)', 24) called at /usr/local/share/perl/5.10.1/Net/Server/PreFork.pm line 144 Net::Server::PreFork::loop('Starman::Server=HASH(0x64cfce8)') called at /usr/local/share/perl/5.10.1/Net/Server.pm line 116 Net::Server::run('Starman::Server=HASH(0x64cfce8)', 'port', 'ARRAY(0x66fda10)', 'host', 'ARRAY(0x66fd9e0)', 'proto', 'ARRAY(0x66fda40)', 'serialize', 'flock', ...) called at /usr/local/share/perl/5.10.1/Starman/Server.pm line 67 Starman::Server::run('Starman::Server=HASH(0x64cfce8)', 'CODE(0x37bad18)', 'HASH(0x66fd8c0)') called at /usr/local/share/perl/5.10.1/Plack/Handler/Starman.pm line 18 Plack::Handler::Starman::run('Plack::Handler::Starman=HASH(0x5de49e0)', 'CODE(0x37bad18)') called at /usr/local/share/perl/5.10.1/Plack/Loader.pm line 88 Plack::Loader::run('Plack::Loader=HASH(0x1d267b0)', 'Plack::Handler::Starman=HASH(0x5de49e0)') called at /usr/local/share/perl/5.10.1/Plack/Runner.pm line 263 Plack::Runner::run('Plack::Runner=HASH(0x37b2460)', 'CODE(0x37bad18)') called at ./script/canto_start line 99"

Original comment by: Antonialock

[pombase-admin]

• assigned_to: Kim Rutherford
• Group: -->
• Priority: 5 --> 9

Original comment by: Antonialock

[pombase-admin]

• status: open --> closed-fixed

Original comment by: kimrutherford

[pombase-admin]

disk I/O error

Sorry about that. The disk that Canto uses was full. I'll put some monitoring in place and try to stop whatever was filling up the disk.

It's fixed now.

Original comment by: kimrutherford