search

pombase / curation

PomBase curation
7 stars 0 forks source link

species distribution fixes #10

Closed pombase-admin closed 8 years ago

pombase-admin commented 9 years ago

  1. This count also looks a bit odd, Val? I would assume that number conserved in fungi will be ≤eukaryotes but cdc2: conserved in fungi

    4564 conserved in eukaryotes

    4482

Yeah, there are quite a lot of proteins, which when I did this, were only present in pombe (but no other fungi) and metazoa, like this one:

http://www.pombase.org/spombe/result/SPBC26H8.13c http://www.ebi.ac.uk/interpro/entry/IPR022773/taxonomy

and this one http://www.pombase.org/spombe/result/SPCC18.17c

So there really was no broad fungal conservation. Now there are japonicus and octospous for many.

Others I need to fix.....

Original comment by: ValWood

pombase-admin commented 9 years ago

Also on my todo list. Need to see if we can extend any of the fungal-specific families. More interesting if conserved to vertbrates. Speak to Jurg about this, might be a student project for UCl as will impact his "unknowns". Also looking for S. cerevisiae orthologs for those which only hit a few fungi.

Original comment by: ValWood

ValWood commented 8 years ago

transferred to https://github.com/pombase/curation/issues/810