pombase / curation

PomBase curation
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check nucleus #1025

Closed ValWood closed 8 years ago

ValWood commented 8 years ago

Found list scuttled away on my desktop (called check_uniprot KW) , check

has IEA to more specific gon7 EKC/KEOPS complex subunit Gon7 (predicted) has NAS moa1 meiotic cohesin complex associated protein Moa1 has IC nse4 Smc5-6 complex non-SMC subunit Nse4 has ISM gaf1 transcription factor Gaf1 has ISM thi1 transcription factor Thin SPBC902.03 Nem1-Spo7 complex regulatory subunit Spo7 (predicted) nem1 Nem1-Spo7 phosphatase complex catalytic subunit Nem1 (predicted)

not required, unlikely nuclear, no evidence from small—scale experiment yop1 ER membrane protein DP1/Yop1 new16 cytochrome c oxidase subunit VIb-related protein (predicted) btf3 nascent polypeptide-associated complex beta subunit egd2 nascent polypeptide-associated complex alpha subunit Egd2 ssc1 mitochondrial heat shock protein Hsp70 zhf1 zinc ion transporter Zhf1 ogm1 protein O-mannosyltransferase Ogm1 SPAC343.14c translation initiation factor eIF2B beta subunit (predicted) cdc12 formin Cdc12 SPAC19A8.02 pleckstrin homology domain protein meu14 sporulation specific PIL domain protein Meu14 rga2 Rho-type GTPase activating protein Rga2 elf1 AAA family ATPase Elf1 ebs1 EST1 family nonsense-mediated mRNA decay (NMD) pathway protein Ebs1 (predicted)

not known/unlikely SPBC1348.15 Schizosaccharomyces pombe specific protein SPBC1348.09 short chain dehydrogenase (predicted) SPAC328.04 AAA family ATPase, unknown biological role SPAC750.04c S. pombe specific 5Tm protein family SPBC1348.03 S. pombe specific 5Tm protein family mug135 mug2/mug135/meu2 family, with repeat expansion rid1 GTPase binding protein Rid1 (predicted) adn1 adhesion defective protein ptp4 phosphatidate cytidylyltransferase Ptp4 (predicted)

not known spd2 ribonucleotide reductase (RNR) inhibitor family SPAC11D3.11c zinc finger protein, truncated SPBC19F8.02 nuclear distribution protein NUDC homolog smi1 cell wall biosynthesis/ cell cycle regulator (predicted) SPCC11E10.01 cystathionine beta-lyase (predicted)

ValWood commented 8 years ago

This was done already, I think thsi list is just the ones I didn't make a specific nuclear annotation for