mRNA catabolism - Githubissues

ValWood commented 7 years ago

Been through all annotations

NMD cytoplasmic exosome ski complex upf1-3 tif45

NSD cytoplasmic exosome ski complex upf1-3 poleto

General (deadenylation dependent turnover) CCR4-NOT complex Dcp mRNA capping complex and other decapping proteins PUF family RNA binding proteins PAN complex

Surveillance nuclear Exosome TRAMP complex NURS complex ??? +mmi1 + pla1? rna15?

Still need to figure out the exact roles of mrt4 nab2 sts5 zfs1

[x] GO:0070651 - nonfunctional rRNA decay (biological_process) should be part of nuclear surveillance
[x] still waiting to hear about selective elimination of meiotic transcripts, still think this is surveillance

ValWood commented 7 years ago

https://github.com/geneontology/go-ontology/issues/12847

ValWood commented 7 years ago

closing for now. can refer back to this ticket in next review to see where I left off.

pombase / curation

mRNA catabolism #1204